AMCG00012636


Basic Information

Item Value
gene id AMCG00012636
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 866131 ~ 893617 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012636
ATGACAAAGGGTGTTCTCTTGCTAGGTTATCCTCCTTCCAACATCTCACCTCTCACCTCCCCGTGCCATTCACCCATCCAGGGGACTCCAGCCTCGAGCCCCACCAGCAAAGTCCCCTCTGTGGAGCTCCCTGACACAGCTGACTCACTGACCAGGCGCACTGTGGCCCAACACAAGGCCTTAACCCTCACTCAGAGCGCTCCCGACACCACGGGCCAACACAGGGCTCCCGTGCTGTTCTGCAGTAGCTGTGGAAGACGATATGGTAAACTCAGCCATGGTGACGGCTCTTTGGACAAAGGGGATATCCCCACACACCGGATACACAGGACAGATGATCTAGCTCTTGCTTCGTCAGACTATGACAGCACCCATGAGACCAACAACAGCGACAGCAGTGACATTGCACAGAATGAAGACGAGCCTGACTGTGCCAAGCAGCTAGCAGAGTCCAGGGAAGCCTCAGTGTGCCAGGCGTACAGACCAGACACTCTCCTGCTGGGTCATCATCATCACCCCTTAATACCAGCAGAGGACAAGCCCATTCTGGCCCCAGAACCTCTAGTGATGAAACACCTGGAGCCCATCATGATCCAGCTCAACAATTGGAACTTCCCCATCTTCGACCTGGTGGAGCAGACACATGGGAAGTGTGGCTGCATCCTCAGTCAGGTCTCCTACCGGCTCTTTGAAGACACTGGGCTTTTTGAAACCTTTAAAATCCCTGCCAGGGAGTTCATGAATTACTTTCACGCCCTGGAGAATGGATACAGAGACATCCCTTATCACAATCGAATCCACGCCACAGATGTGCTGCATGCAGTCTGGTACCTTACAACCCAGCCAATCCCTGACCTCCCCAATCTCATCAATGACCACAGCTCTACTAGTGACTCCGACTCTGATAGCGGCATCACCCACAGCCACATGGGCTATGTGATGTCCAAGACCTACGGCTCTATAGAGGAGAGATACGGCTGCCTATCGGGACTCATCCCTGCACTGGAACTCATGGCGCTTTACGTGGCAGCCGCAATGCATGACTACGACCATCCTGGCAGAACCAACGCCTTTCTTAACCACCACGCTGCCTCCGCCTGGAACCTCTTCATGTCACGACCCGAGTACAACTTCTTAGTCAACCTGGACCACGTGGAGTTCAAGCGTTTTCGCTTCCTGGTTATCGAGGCCATCCTTGCCACTGACCTGAAGAAGCACTTTGACTTCCTGGCTGAATTCAATGCCAAGGTAAATGACGAAGTAGGTTCTGGTATTGATTGGTCCAATGAAAATGACCGTCTTCTAGTGTGCCAGATGTGCATCAAGCTGGCCGACATTAATGGCCCAGCAAAGTGCAAAGAACTGCATCTGCGGTGGACGGAGGGCATTGTGAATGAGTTCTACGAGCAGGGTGATGAGGAGTCCAGTCTGGGCCTGCCCATTAGCCCCTTCATGGACCGCTCAGCCCCCCAGCTGGCCAATCTGCAGGAGTCATTCATCACTCACATTGTGGGACCTCTCTGTAACTCTTACCACTCTGCTGGCCTGATCCCTGGGCGCTGGATCGAGggtgaagaagaggaggaagaggaaggggacATGGATGAGAACGAGGAGGAGGATGACACAACGGAAGAAGATGCCTCTGACAGCTCTGAGGCCTCA

Function

GO: NA

KEGG:

id description
K19021 PDE3A; cGMP-inhibited 3',5'-cyclic phosphodiesterase A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012636 True 1665 mRNA 0.54 10 866131 893617

Neighbor

gene id symbol gene type direction distance location
AMCG00012638 NA coding downstream 49594 800059 ~ 816537 (-)
AMCG00012637 NA coding downstream 73749 767005 ~ 792382 (-)
AMCG00012634 LOC108427023,LOC106609119,LOC105893998,LOC102196680 coding downstream 114582 745335 ~ 751549 (-)
AMCG00012630 NA coding downstream 252924 599855 ~ 613207 (-)
AMCG00012631 NA coding downstream 275478 589227 ~ 590653 (-)
AMCG00012635 pde3a coding upstream 20818 914435 ~ 920125 (-)
AMCG00012640 NA coding upstream 119865 1013482 ~ 1037353 (-)
AMCG00012643 aebp2,LOC103380429,LOC101074123,LOC106609187 coding upstream 145152 1038769 ~ 1345918 (-)
AMCG00012642 NA coding upstream 466706 1360323 ~ 1582270 (-)
AMCG00012649 NA coding upstream 1422385 2316002 ~ 2317119 (-)
G38355 NA non-coding downstream 25644 837111 ~ 840487 (-)
G38305 NA non-coding downstream 269313 596608 ~ 596818 (-)
G38472 NA non-coding upstream 991012 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 1007143 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 1101230 1994847 ~ 1995063 (-)
G38478 NA non-coding upstream 1138220 2031837 ~ 2032211 (-)
G38501 NA non-coding upstream 1401343 2294960 ~ 2295164 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 326540 514222 ~ 539591 (-)
AMCG00012646 LOC107658747,LOC107707963 other upstream 685338 1578955 ~ 1817200 (-)
G38458 NA other upstream 883237 1776854 ~ 1777221 (-)
G38490 NA other upstream 1290268 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 5158747 6052364 ~ 6063817 (-)
G39487 NA other upstream 5562104 6455721 ~ 6456178 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028424 pde3a coding NC_007115.7 CM002888.2 2752852 ~ 2868112 (-)