AMCG00012639 (LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237)


Basic Information

Item Value
gene id AMCG00012639
gene name LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 778908 ~ 839266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012639
ATGGGGGACATTGACTGGGCCCGGAAGCGGGGGATCCACTGGACGTTCTGCAGCCGGCGAGACAAGGCGAGATATAAGTTATTCCGTTTTCCCCGCAGACTGGATCCCACTCCTTCCCAGAGCACAGGCAACCAGAGTTGCAGTCTGCTAACAATGATCTCTCGAGGTAAGAAACGTGCTGGACTCTTTGTGTatacaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaggaaaaaagaaggaaagGTCTTGGCAGCGACTTAGGCAGGAACCAGAAAGGTATGGCAGATAGGAGGGTGATGACACCAGCTATTAAATACCCCAGCCACCATGCACCCACCCAGCGGGCATCTCCTGGGATGTTCCTCATGGCATTGTCATTTGCCTATTTCGCAAAGGCATTATCTGGGAGCTACATGAAAAGCACAATAACCCAGCTGGAGAGACGATTTGATATCCCAAGTTACTTAATAGGAGTCATTGATGGCAGCTTTGAAATAGGGAATTTGCTGGTCATAGCGTTCGTGAGCTACTTCGGGGCCAAGCTTCACAGACCAAAAATTATTGCAGTTGGGTGCCTCCTGATGTCCATTGGAACGTTTCTAATAGCAATGCCACATTTCTTCATTGGACGAGAACAAGAAGCACTGCCGTACATTTGCTGA
>TU47822
AGAGTATCAAAGGGATGAGATGCTTTCTTTTAATCCTGTCTTTGTCAAGATAGCTTGTAATCTCATCTGCTGCTTTTGAAGGGCACTCGAAACTCACCAGGCTCTTTGGtctgaatttttattttttaattttactctaGATGTTCCTCATGGCATTGTCATTTGCCTATTTCGCAAAGGCATTATCTGGGAGCTACATGAAAAGCACAATAACCCAGCTGGAGAGACGATTTGATATCCCAAGTTACTTAATAGGAGTCATTGATGGCAGCTTTGAAATAGGGAATTTGCTGGTCATAGCGTTCGTGAGCTACTTCGGGGCCAAGCTTCACAGACCAAAAATTATTGCAGTTGGGTGCCTCCTGATGTCCATTGGAACGTTTCTAATAGCAATGCCACATTTCTTCATTGGACGCTATAAGTTTGAAACGACAATTAGATCATCAGTGAACTCAACAAACAACCTTTCTCCTTGTCCAGCAAATTCACATGAGGCAGTGACAGCTCGTGACAAGCCATCTATAGTGCCAAGTGCAGGTAATGTATTCACTGTTCATTATTATGAAGTTACGCTACTGAT
>TU47823
GTTATTTTATCTCTGCACCAAAAGAACATGAACTTGCCCTTCTTGGATGGAACAGAATAACAAATGTTCCTCATGGCATTGTCATTTGCCTATTTCGCAAAGGCATTATCTGGGAGCTACATGAAAAGCACAATAACCCAGCTGGAGAGACGATTTGATATCCCAAGTTACTTAATAGGAGTCATTGATGGCAGCTTTGAAATAGGGAATTTGCTGGTCATAGCGTTCGTGAGCTACTTCGGGGCCAAGCTTCACAGACCAAAAATTATTGCAGTTGGGTGCCTCCTGATGTCCATTGGAACGTTTCTAATAGCAATGCCACATTTCTTCATTGGACGCTATAAGTTTGAAACGACAATTAGATCATCAGTGAACTCAACAAACAACCTTTCTCCTTGTCCAGCAAATTCACATGAGGCAGTGACAGCTCGTGACAAGCCATCTATAGTGCCAAGTGCAGGTAATGTATTCACTGTTCATTATTATGAAGTTACGCTACTGAT

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 1C1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012639 True 681 mRNA 0.48 6 778908 839266
TU47822 False 580 TUCP 0.41 3 822151 824708
TU47823 False 503 TUCP 0.41 4 820524 824708

Neighbor

gene id symbol gene type direction distance location
AMCG00012633 NA coding upstream 2160 638993 ~ 776748 (+)
AMCG00012629 NA coding upstream 219906 542979 ~ 559002 (+)
AMCG00012627 gys2,LOC106566433 coding upstream 271245 477795 ~ 507663 (+)
AMCG00012622 NA coding upstream 654651 21980 ~ 124257 (+)
AMCG00012645 plcz1 coding downstream 921991 1761257 ~ 1769703 (+)
AMCG00012644 NA coding downstream 939341 1778607 ~ 1807616 (+)
AMCG00012647 NA coding downstream 1061502 1900768 ~ 1901673 (+)
AMCG00012650 NA coding downstream 1426307 2265573 ~ 2295248 (+)
AMCG00012653 NA coding downstream 1494609 2333875 ~ 2359147 (+)
G38268 NA non-coding upstream 235255 523730 ~ 543653 (+)
G38356 NA non-coding downstream 8773 848039 ~ 853017 (+)
G38359 NA non-coding downstream 26871 866137 ~ 866383 (+)
G38363 NA non-coding downstream 54045 893311 ~ 893586 (+)
G38364 pde3a non-coding downstream 80599 919865 ~ 920124 (+)
G38379 NA non-coding downstream 248603 1087869 ~ 1088192 (+)
AMCG00012641 NA other downstream 555573 1394839 ~ 1581388 (+)
AMCG00012681 NA other downstream 3344609 4183875 ~ 4251594 (+)
G38954 NA other downstream 3531047 4370313 ~ 4373574 (+)
G39297 NA other downstream 4713151 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 4968580 5807846 ~ 5823515 (+)

Expression


Co-expression Network