AMCG00012642


Basic Information

Item Value
gene id AMCG00012642
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1360323 ~ 1582270 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012642
ATGCAGAGCGTGCGTGTGCTGTGTTTCCGTGCATTGGATCCCAATAGGAGGTGGTTTTTGAGCGCTATAGCAGGCTTGCGAAACGACGTTGTAAATGTCCAGCAGGAGCACGACACAAGTGCTCTGCAGTTCTCTCAAAGTAATGAGTCATTTGATgcaagatcctgttttttttttttggtggtgctCATTTCCTTCATCCCCGAGAGTCTGTGTGGGAGTGCAGACTGCGGAGAGTCACGGCTGTCCTCTGTTTGGTTTCGTCAGACAACACGCTTCCCGACAGAGAAGAGCAGCAAGCTGCCAGTCATCTGTGCTGTCTTAATGAGGtcattGGCAGAGAAGAGCGCGGTATGCAAAGCCCGCACTCCGGGAGGACAGGCCGCTCCAGCCCGCACCTCAACCGAGCTGCGCCACACAGCGGTCAACACcccacactacactacactacaagACAGGAAAAGCATCCGAAATcTCTGTTCTGGTACAATTCAGAGCACTTCTGAACATGATGCTCCTCAtcacAATGAACGGAAAGTAACTTGCAAGCATCCCGTCTCAGGTCTCCCGTCCCAGGACAACTGTATCTTTGTAGTCAGTGAACAACCGGTTTCAAAAATGGCCTCCcatgaaaaaaaagacaggcCAGTGAGCACAATGAGCGAAGCTTCAAACTACACTATGACGTCGGAATACGCCACACACCCTGGAAGCCCTATAGGCAGACCTTCAAGGTCTTCAAAAAAAGTTCATAACTTTGGAAAGAGGTCCAACTCCATAAAGAGAAATCCCAATGCACCTGTAATCAAGAGCAACTGGCTTTATAAACAGGACAGCACTGGGATGAAGCTTTGGAAGAAGAGGTGGTTCGTGCTATCGGATATGTGTCTGTTCTATTACAGAGatgaaaaagaagaaggaatTCTAGGAAGTATTCTGCTGCCTAGCTTTCATATATCTATGCTTTCTGTAGATGATCATATAAACAGGAAATATGCATTCAAGGCAACCCATCCAAACATGAGGACATATTACTTCTGCACAGATACAGCCAAAGAGATGGAGTCTTGGATGAAGGTGATGACGGACGCAGCTCTTGTGCACACGGAGCCTGTAAAGAGGCTGGAAAAGCTGAAGGTGGAGCACCGCATCTGCCAAGAGGCCAACAACATGTTGAACCACCGAGTGCTGACAAGGCCAGAACTGCAGAACAACGAGAGGAACCGGGAAGTGGGGCACTTcgaaactgaaaagaaacagaaagacgCGGAGAAGTATGGCTTCCAGAAGGACGGGACAGAGAGGCCGCCCCTGACCAAGATCAATAGCATCAAAAATCAATCCgggatggggatgggggtgggAGCGACAGGGGCAGCTTTAGCGATACGAGACATCGACAACTCAACAGTAACACTGGTGGcgccccccccacacctgcAGGCAGGACAGTACAAACCCGTGCAGGTCAATGGTTCTGGGTCCACAGGGGCGACGGAGAGCCGGCCAGGGAACATGAGTCCTGGGGACATGGGCACCATGCACAGTCAGAAAGGCCAGCCACCCCACCAGCATCATCACCAGCACCTCCACCAGGAACCTGAGAGGACTCTGCAGAGGACCAGCTCCATGCAGCAGCTCGAACAGTGGGTGCGGACACAGAGGGTACGAGGCCAAGAGGACGAGAACAGAAGtatcACCTCGTACCAAACTCTGCCCAGAAACATGCCGAGTTACCGGGCACAGGTGGTCCCTCACTACCCAGAGGGCTACCGGACGCTGCCACGGAACAGCGTGACAAGGCCAGACAGCATCTGCAGCATCTCACCCTCGGTGTATGACCGCTCCCTGGGAGCCCTGGCGCCCGACGACAAGCGGCGCTCGATGCGGGACGACACGATGTGGCAGCTGTACGAGTGGCAGCAGCGACAGGTCTACACCAAGCAGGGCCCCATCGGCAGTGGTGGCTACGGCACACTGCCCAGTCCCAAGACCATGATCAACATCTCCGATCATGTCCCCCACTCCATCCCTCCCTCGCCCTCCCATGGCTCGCTGGCGCTCTACCAGGGCTACTCCCCGCTCCGCACCTACAATGTGGGATCCCGGTCTGAAGTGTCTTCGCCCGTGTTCAGGGGAGACATCACCATTGACCGCCGCCACCGCACGCAGCTTACCAAGCCTGAGGAGCTTACCCTGTTGCTCATCAAACTCCGACGGCAGCAGGCGGAGCTGAATAGCATCCGGGAGCACACTTTAGCACAGCTTATGCAACTAAATCTTGATGCCACCAACCCAAAGATGTCCCAAGATGAGTATCGGGATACAGCCTATATCTACAGGCCAGAGGAACTTGACATTGATACTAAACTTAGCAGACTATGTGAACAAGACAAAGTGGTGCGTACCCAGGAAGAAAAGCTGCAGCAACTTCACAGAGAAAAGCACACACTGGAGCAGGCGCTGCTGGCTGTCAGTCAGGAAATTGAGATGAGCGCAGACGATCCTGCTGCCATCCAGAGTGTGGTGCAGCAGAGAGACGTGCTGCAGAATGGCCTGTTGAGCACCTGTCGAGAACTGTCTCGCGCTAACGCAGAGCTGGACAGGTCGTGGAGGGAATACGATAGGTTAGAGTCTGAAGTCACTTTGGCGAAAAACAATCTACATGAGCAGCTGGAAGCTCTTGGGAACTCACAGTCAGAGGCTTGCAGTCAGAAGCATGCACAGATCCAAAAAGAGCTGTGGAGAATACAAGACGTTATGGAGGCTCTGAGCAAAAACAAGCCACAGAGAAGCACCACAGACACAGGTTTCTTGGGCTCCAAACCGATTTcaagtaaatataaaaatgagGAAGAGGACTCTGTGCCTCCGCGGCCTCCCCTCCCCCAGTCCTATGATATCACTGAACGGCCTCCCATAGTCCCCCCTTTGCCCATAAACAGCAGCCTGCAAATGCCCTCTGCAGGCAGGGCTGTGGTTCACCGAACTGAGGACAGAAAGACATACCACGCCCAAGGCTGTCAGAGAAACGGGACTCACAGCGGCCCAGACTACAGGCTTTACAAGAGTGAACCTGAGCTGACAACTGTGGCAGAGGTGGACgagtccaatggagaggagaaGTCGGAGCAAGCTGCTGATAAAGAGCCTTGCAGTGCCAAAGGTATTACTTACCCTGTCGGGATAGTGCCTCCAAGAACTAAATCGCCTATGCCAGAATCATCGACGATAGCCTCCTATGTCACCTTGAGAAAAGGCAAGAAGTTGGATCCCAGAATGGATCGTCCTTGGAGCGCAGTGGAGCAGCTCTGCCTAGTGGAGACATCCCGGCCACGCATGAGCGTGGAGGAGCAGCTGGAGAGGATCAAACGACACCAGCAGGCGACGCTGCGTGAAAGGAAGAAGGGTCTGAGCGTCATCAGCAGCCAGGAGAACTCCCCCAGCCGAAGCCCCTCCTTCTCCAAAGACAACCCCTTCAGGTCACTGCAGggGCGTAAAAGAGATGATGTTGTCTCGTGTGACATTAAAGAAATAGAGGATTCCCTCAGAGACCAGGAGCTGGACAATGAGCAGGAAACCCCTGCAGAAGAAATTGCGCGGCTTAAGGAGGCCGGGGAGTCCGAGCAGTTCAACGTGGACAAGGAGTTATCTAAGCCAGAAAAGGTTCTGATCCCAGAGAGGTATGTTGAGTCGGACCCCGAGGAGTCCCTGAGTCCCGAGCAGGAGGCAGACAAGCAGAAAAAGGTGGACCGGATCAAAGCAATTATTGCCAAAAACAGCATGCAGAACGTGGTGCCTGTGGTTACCCTGAGGCCTGAAGACAACGCAGAGGAGGAATCAAGTGTCCAGGAGCAGGAGAAGATGATCAACATTTCATACGAGCTGGCAGCCGAGGCTTCCAAACGAAGCAAACTTGTAGCAGTGAAAAGCCTGTCTTCTCCACCTCAATCCCCAACTTCATCCTCACCGCCACACCCCCAGCTCGCTGAAGGATCCCACTTCATGTGTGTGTAG

Function

GO: NA

KEGG:

id description
K23797 PLEKHA4_5_6_7; pleckstrin homology domain-containing family A member 4/5/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012642 True 4017 mRNA 0.53 29 1360323 1582270

Neighbor

gene id symbol gene type direction distance location
AMCG00012643 aebp2,LOC103380429,LOC101074123,LOC106609187 coding downstream 14405 1038769 ~ 1345918 (-)
AMCG00012640 NA coding downstream 322970 1013482 ~ 1037353 (-)
AMCG00012635 pde3a coding downstream 440198 914435 ~ 920125 (-)
AMCG00012636 NA coding downstream 466706 866131 ~ 893617 (-)
AMCG00012638 NA coding downstream 543786 800059 ~ 816537 (-)
AMCG00012649 NA coding upstream 733732 2316002 ~ 2317119 (-)
AMCG00012648 NA coding upstream 737257 2319527 ~ 2345217 (-)
AMCG00012655 slc25a3,LOC102778869,LOC105895663 coding upstream 839338 2421608 ~ 2431840 (-)
AMCG00012656 NA coding upstream 854580 2436850 ~ 2468497 (-)
AMCG00012663 NA coding upstream 1295498 2877768 ~ 2910246 (-)
G38355 NA non-coding downstream 519836 837111 ~ 840487 (-)
G38305 NA non-coding downstream 763505 596608 ~ 596818 (-)
G38472 NA non-coding upstream 302359 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 318490 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 412577 1994847 ~ 1995063 (-)
G38478 NA non-coding upstream 449567 2031837 ~ 2032211 (-)
G38501 NA non-coding upstream 712690 2294960 ~ 2295164 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 820732 514222 ~ 539591 (-)
G38458 NA other upstream 194584 1776854 ~ 1777221 (-)
G38490 NA other upstream 601615 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 4470094 6052364 ~ 6063817 (-)
G39487 NA other upstream 4873451 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 5056210 6638480 ~ 6695924 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location