AMCG00012643 (aebp2,LOC103380429,LOC101074123,LOC106609187)


Basic Information

Item Value
gene id AMCG00012643
gene name aebp2,LOC103380429,LOC101074123,LOC106609187
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1038769 ~ 1345918 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012643
ATGCATCTACACACTAACCCCCCTCTGCATGTGGATTATGGCTTCAAGGTGGCAGACAATGAGTCAAATCCTAACATCTGGAGTCCTGGATTTTTCCACATGCTGGAGTTGAGAGTGAAGCTAGTCGAACGGTCCCCATCTGGCACAGCGTTAACATCCACGGAGGTTTCAGATGAGAGGTCTCATTTGGGTATCAGCAGCACCCTGATGGACATGGAGAGCACTGTGTCCAGCGGGCGTTCCACGCCAGCCATGATGAATGGCCAGGGCAGCGTCACGCCCTCTGCCAAGAGCATTGCCTACACCTGCTGTTGGGACCAGTGTCACAGCTGCTTCAATTCCAGCCCCGACCTGGCCGAGCACATCCGCTCCCTCCATGTGGACGGACAGAGAGGCGGGgtttttgtatgtttgtggaAAGGCTGTAAAGTGTACAACACACCCTCCACCAGCCAGAGCTGGCTTCAGAGACACATGCTGACACACAGCGGAGACAAGCCTTTCAAGtgtgtggttGGGGGCTGCAATGCCAGCTTTGCATCTCAGGGTGGTCTGGCTCGGCACGTCCCCACACATTTCAGCCAGCAGAACTCCTCCAAGGTGTCCAGCCAGCCCAAGGTGAAGGAAGAGTCCCCCTCAAAAGCCGGCATGAACAAGAGGAggaagttaaaaaacaaacgcCGTAGATCACTACCGAGGCCTCATGATTTCTTTGACGCACAAACTATGGATGCCATTCAGGGCAAGGCGGCATGGCTGAACTTAGAGACACGCATAGAGAGCATGGGGAATGGGCACAGTGTCGTTTTTGATAGCACAACGGTGTTTGTTGTGTCTCCGCAGAACAATGCCACAGAAGAGACCGAAGCGGAGctctaCCTTGTGTTCCTTGGACAAAGTGCTGTGGTGTCTCCAAGGATGGAGCCCTGTGACTTCCACATGGAGCTGGAAGACAAAGTGCTGAAAAAGATACTTAAGTGGCTCACAGGTGTTCAGAATGGCTTCAGGTGCAGCAGACTTCCAGACCCACAGGACCTCCCAGCAGCAGTGTGCGCCCCTCAGGATTCTCAGGTAAGCATCGAGGCATACCCATTACCAGAACTGAAGCCAATAGACTTTTAA

Function

symbol description
aebp2 Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Orthologous to human AEBP2 (AE binding protein 2).

NR:

description
PREDICTED: zinc finger protein AEBP2 isoform X3

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K17452 AEBP2; zinc finger protein AEBP2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012643 True 1122 mRNA 0.53 14 1038769 1345918

Neighbor

gene id symbol gene type direction distance location
AMCG00012640 NA coding downstream 1416 1013482 ~ 1037353 (-)
AMCG00012635 pde3a coding downstream 118644 914435 ~ 920125 (-)
AMCG00012636 NA coding downstream 145152 866131 ~ 893617 (-)
AMCG00012638 NA coding downstream 222232 800059 ~ 816537 (-)
AMCG00012637 NA coding downstream 246387 767005 ~ 792382 (-)
AMCG00012642 NA coding upstream 14405 1360323 ~ 1582270 (-)
AMCG00012649 NA coding upstream 970084 2316002 ~ 2317119 (-)
AMCG00012648 NA coding upstream 973609 2319527 ~ 2345217 (-)
AMCG00012655 slc25a3,LOC102778869,LOC105895663 coding upstream 1075690 2421608 ~ 2431840 (-)
AMCG00012656 NA coding upstream 1090932 2436850 ~ 2468497 (-)
G38355 NA non-coding downstream 198282 837111 ~ 840487 (-)
G38305 NA non-coding downstream 441951 596608 ~ 596818 (-)
G38472 NA non-coding upstream 538711 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 554842 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 648929 1994847 ~ 1995063 (-)
G38478 NA non-coding upstream 685919 2031837 ~ 2032211 (-)
G38501 NA non-coding upstream 949042 2294960 ~ 2295164 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 499178 514222 ~ 539591 (-)
AMCG00012646 LOC107658747,LOC107707963 other upstream 233037 1578955 ~ 1817200 (-)
G38458 NA other upstream 430936 1776854 ~ 1777221 (-)
G38490 NA other upstream 837967 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 4706446 6052364 ~ 6063817 (-)
G39487 NA other upstream 5109803 6455721 ~ 6456178 (-)

Expression


Co-expression Network