AMCG00012646 (LOC107658747,LOC107707963)


Basic Information

Item Value
gene id AMCG00012646
gene name LOC107658747,LOC107707963
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 1578955 ~ 1817200 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012646
atggaTGCTTCTCCATCCTGCATGCCCCCGGCCCCACTGTCCATGGCCTCAGCAGACTCCGGCCCAGGCAGGAACAGATGGCAGGATGATGCCATCATACTGGTGGCATGTGACAGGGAGGGTGGCAgctctccctctcctgcccacagcaacaacaacagcagctgtACCACCAAGAAGCCTCCACCCAGAGGCACCATCAGCCTCAAAACAGCAAAGAGTCCTTCATCCATGCTTGCGGGGACCACCCCCTGGAATCCTCATGGCCTACAGACCCTGCTCCAcaataaacaatgcaattgcAACTACCATGGAATGAAAGGCCTGCTGGGACTTGCTGGCAACAGGGAGCTGGACATAATTATGACCCTCCTGCTGGAGTCTAACCAGaaactTCTGGAGAGAAccCTGCCTGTCGAGAGTGTGTTCTGGTCTGCTCTAAATGCATGTGGGTCTCGCTCTGGGGTCTCTCGCTCGGCGTTTGGCACGCACGcgcgcacgcacgcacgcgcgCACGCGCACGCTCGCTCCCGAGAGGATTTTCTCCGCGCCGCGCGCTCCCACGGCCGCGTTGCCAGGGTTTCCCGTGCCTGCGCGGCGCGCCGCGTCGTGGACGCGCACTTCAATCTCAGTGCATTGCCAGACATGGCGGCGGATCTGAACCCTGAGTGGCTCTCCTGTCTCCCGTCTTCTTGGAGTTACGGGGTAACCCGGGACGGACGCGTCTTCTTCATCAAGTAA
>TU47918
CTTCAATCTCAGTGCATTGCCAGACATGGCGGCGGATCTGAACCCTGAGTGGCTCTCCTGTCTCCCGTCTTCTTGGAGTTACGGGGTAACCCGGGACGGACGCGTCTTCTTCATCAATGAACAGGCTAAGAGTACAACCTGGTTGCATCCAGTCACGGGAGAGGCCGTCATTACTGGACATAGGAAAACTGCAGATCTACCCACTGGCTGGGAAGAAGGATACACATTTGAAGGAGCTCGGTGCTTCATAAActgacgctcttatccagggtgactggataccttgctcaagggtacaacagcactgccccacccaggatttgaacccacaaccttccagttactccacagtgctgccttttGATGCAGAGAGGCtgcatgtgatttttttttttcttctcctccaacAGGAGATATTTCCCAAAGAATCTGTATGTAACCTGTTCCAAGATCTGCATacataagttaattaaaatgatgccACTGAAAAATTATAACTGCACCAGGCAATGAATaatcacaaaaatacataaataaatgctgtattaACCTGCAAAGCGAGCTGCCTGGTTAAGATTTCAAGAGCTCTTTGATTACTCTTCATAAGCACAGCATGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012646 True 741 mRNA 0.60 8 1583313 1817200
TU47918 False 620 lncRNA 0.45 4 1578955 1583433

Neighbor

gene id symbol gene type direction distance location
AMCG00012643 aebp2,LOC103380429,LOC101074123,LOC106609187 coding downstream 233037 1038769 ~ 1345918 (-)
AMCG00012640 NA coding downstream 541602 1013482 ~ 1037353 (-)
AMCG00012635 pde3a coding downstream 658830 914435 ~ 920125 (-)
AMCG00012636 NA coding downstream 685338 866131 ~ 893617 (-)
AMCG00012638 NA coding downstream 762418 800059 ~ 816537 (-)
AMCG00012649 NA coding upstream 498802 2316002 ~ 2317119 (-)
AMCG00012648 NA coding upstream 502327 2319527 ~ 2345217 (-)
AMCG00012655 slc25a3,LOC102778869,LOC105895663 coding upstream 604408 2421608 ~ 2431840 (-)
AMCG00012656 NA coding upstream 619650 2436850 ~ 2468497 (-)
AMCG00012663 NA coding upstream 1060568 2877768 ~ 2910246 (-)
G38355 NA non-coding downstream 738468 837111 ~ 840487 (-)
G38305 NA non-coding downstream 982137 596608 ~ 596818 (-)
G38472 NA non-coding upstream 67429 1884629 ~ 1887591 (-)
G38473 NA non-coding upstream 83560 1900760 ~ 1901924 (-)
G38475 NA non-coding upstream 177647 1994847 ~ 1995063 (-)
G38478 NA non-coding upstream 214637 2031837 ~ 2032211 (-)
G38501 NA non-coding upstream 477760 2294960 ~ 2295164 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 1039364 514222 ~ 539591 (-)
G38490 NA other upstream 366685 2183885 ~ 2184163 (-)
AMCG00012732 NA other upstream 4235164 6052364 ~ 6063817 (-)
G39487 NA other upstream 4638521 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 4821280 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 6074289 7891489 ~ 7904455 (-)

Expression


Co-expression Network