AMCG00012656


Basic Information

Item Value
gene id AMCG00012656
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 2436850 ~ 2468497 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012656
ATGTCGGAATTTCTCGAAGACCCGTCGGTCCTCACCAAGGAGAAACTAAAGAGCGAGCTGCTGGCCAATAACGTGGTGCTCCCGAGCGGCGAGCAGAGGAAAGACGTCTATGTTCAGCTCTACTTGCAAAACCTCACCGTCCAAAACAAACCCAAGAAGAATAAAATGCCTCCGGAGACTTTTTCCAGCGATGACGAGCTACCTCCCCCCGTGGTGGCCAACAAAAACCGCTCCGGAAGGAAAGCCACAAGGAAGACGGACAAGCCGCGGCCAGAGGACCTGGATGTCACAGAGCTAAGCGATGAGGACCTGAAGGACCAACTGATGAAATACGGGGTCAACGCTGGCCCTGTTGTAGCTTCAACCAGGAAACTATATGAAAAGAAACTACAGAAACTCCTAGACCATGGCCCGCCTGAGATGCAACTGCCACAACCCGTCCCGGCCCTGGCCCCCACCCCTGCCTCTGCCCCCCCAAAGGCGGTTGACAGCAACCAGAATGGCAACACAGACTGCGACCAGTACAGCGACAACGAGGCGGATGAGAAGCCAGAGCCAGTGGTGGAGAAGCTGGAGCCAGTGAAACCTAGAGCGAAAGTCCCAGTAAACCTCAGGACCCGGCGCCTTGAGCACAATAAACCTACCAAGCcccagcagcaacaacaacaacagcagcaggaggaagatgaTGAGGACAGAAATGGAGGGGAAGAGCATGAGCAGGGCATCCTAAATGTCAAGAGAAAGTCCAGgagacaaccccccccccaggaCCAGACTGTCCCAGCCAGTGACGACACTGACCACTCTGAAATTTCAGCCCCCGAGTCTGTTTCACTATCATGGGAGTGTGGAGGTGCCAGGACCTCAAAACGAGGGGTCCTGTCCAAGCCAGGTGAGGTGGAAGAGGACCTTGAGATGCAGCCCCCAGCCCTGCTGCCTGAGCTGTCCACCCTGGAGCCCATCTCTctgcacaacactgcactgctggaGGTGGAGGAGAGGTTGGGCAGTGGTGACCAAGCCCCAAGAACAGAAGCAATTGATATTCTAAAGGAGATGTTCCCCAATGAGCCACACACCCCCACAGGAATCAATGCCTCATGTCGGCGGCCGATCCGTGGCGCAGCAGGACGACCCCTGCCCCCTGTGGACTTCCACTTGGAGGAGTCCCTTCTGCAGCGCACCGAACGCTCTGAGATCTCGCACTACTCCGAACATCGTGTCATACAGCGGGGGAGTGGCGGAGGGGCCAAACTGGCAGCAGCTGTCCCctattcctcctcctcctcctactcctcctcttcctccagcagCACCCTGAAGCTGTCCGCACCCAGCACAGGCAAGACACGATCGCGGCGCTCTCTACCGGTCTGGGTACAGCTGTTGCTGTTGAGCGCTGTGGCCGGTTTCCTGTTCTTCGTGTACCAAGCCATGGAGACCAATGAGATGAACCCCTTCGGAAAGCAACCTTCAGGGCGCTCAGGGTCCACTGGAGATCCCCCCAAGACTGAGTGAAAGAGCCATGGGACaggctttctttctttaactcTCCCCCTCCTTTACTCCCTTCCCCCGTCTGTCTTAAACTCCCATCTCTTGCTCTCTTAACCTATTCCATCAGATCTTTGTGTTCCCAATAAGTGGGCAAGGGTTATCTTTcccctccctccatccttcTCTGCAGATTTGCTTCCTTTACTCTTTGTGCTCAGCAGCAGTGAGTCAATCTCTTGCTTTGAGTGCNNNNNNNNNNcccccccccccaaccc

Function

GO:

id name namespace
GO:0007084 mitotic nuclear envelope reassembly biological_process
GO:0000793 condensed chromosome cellular_component
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K24031 TMPO; lamina-associated polypeptide 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012656 True 1775 mRNA 0.56 9 2436850 2468497

Neighbor

gene id symbol gene type direction distance location
AMCG00012655 slc25a3,LOC102778869,LOC105895663 coding downstream 5010 2421608 ~ 2431840 (-)
AMCG00012648 NA coding downstream 91633 2319527 ~ 2345217 (-)
AMCG00012649 NA coding downstream 119731 2316002 ~ 2317119 (-)
AMCG00012642 NA coding downstream 854580 1360323 ~ 1582270 (-)
AMCG00012643 aebp2,LOC103380429,LOC101074123,LOC106609187 coding downstream 1090932 1038769 ~ 1345918 (-)
AMCG00012663 NA coding upstream 409271 2877768 ~ 2910246 (-)
AMCG00012664 NA coding upstream 453204 2921701 ~ 2962489 (-)
AMCG00012665 LOC105909609,LOC107680042,LOC107710670 coding upstream 618939 3087436 ~ 3100475 (-)
AMCG00012662 NA coding upstream 652703 3121200 ~ 3170801 (-)
AMCG00012666 NA coding upstream 734657 3203154 ~ 3272283 (-)
G38501 NA non-coding downstream 141686 2294960 ~ 2295164 (-)
G38478 NA non-coding downstream 404639 2031837 ~ 2032211 (-)
G38475 NA non-coding downstream 441787 1994847 ~ 1995063 (-)
G38473 NA non-coding downstream 534926 1900760 ~ 1901924 (-)
G38472 NA non-coding downstream 549259 1884629 ~ 1887591 (-)
G38533 NA non-coding upstream 30426 2498923 ~ 2500343 (-)
G38539 NA non-coding upstream 95808 2564305 ~ 2564702 (-)
G38549 NA non-coding upstream 137001 2605498 ~ 2605768 (-)
G38552 NA non-coding upstream 154492 2622989 ~ 2623189 (-)
G38573 NA non-coding upstream 257532 2726029 ~ 2775202 (-)
G38490 NA other downstream 252687 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 619650 1578955 ~ 1817200 (-)
G38458 NA other downstream 659629 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 1897259 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 3583867 6052364 ~ 6063817 (-)
G39487 NA other upstream 3987224 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 4169983 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 5422992 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 6643944 9112441 ~ 9152405 (-)

Expression


Co-expression Network