AMCG00012665 (LOC105909609,LOC107680042,LOC107710670)


Basic Information

Item Value
gene id AMCG00012665
gene name LOC105909609,LOC107680042,LOC107710670
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3087436 ~ 3100475 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012665
TGCAGTGTGGCAGAGCTGCGCTCTCGTGTATCTCAGGAGCATGAGGTTGTCAAACAGAAGGAGTTGGAAGAAGGACCACGTGCTGCATATGGATATGGGGGCAAGTTTGGGGTGGAGAAGGACCGCATGGACAAGGTGGCTTTGGGGCACAGTTATGTTGCAGAGGTGGAGAAGCACTCATCCCAGACTGATGCTGCGCGGGGCTTCGGGGGGAAGTATGGAGTGCAGAAGGAGCGTGTTGACAAGTCTGCGGTTGGATTCGAGTACAAGGGTGCAGTGGAACAGCACGCCTCTCAGAAAGATTACTCTCGTGGTTTCGGTGGTAAGTACGGAGTAGAGAAGGAGAAGGTTGACAAGACTGCCCTGGGCTATGACTACAAGGGAGAGACGGAGAAGCACCAGTCTCAGAAAGaTTATTCTCATGGTTTTGGTGGGAAATACGGagtggagaaggagaaggtggACAAAGCAGCCCTGGGCTACGACTacaagggagagacagagaagcaCCAGTCTCAGAAAGATTATGCCACAGGCTTTGGGGGGCGCTATGGAGTCCAGACCGATCGAGTGGACAAGAGTGCTGCATCCTTTACCGATATGCAAGCACCCACTTCGTCTTACCAGAAGACCCGGCCGGTGGAGGCCTCAAGCGTGGGTGCGGGCAGTCTGAAGGCACGCTTCGAGAACCTGGCCAAAGCGTCGGATGAGGAGAACCAGCGCCGCACAGAAGAGGAGCGGGCCAGGAGGCAGGCCCGGGAGCagagggagcaggaggagaCACGTCGTAGACAGCAGGAGGTGAAGGAGAGAAGCAGAGAGGAGGAGCCACCTGTTCATCAAGACCCTCCCATTCCTGAGCTGAGGACCACACAAGTGCACAGAGAGCTGCCCAAGATCCCCAGAGAGGAGTGTGAGCCTAGTGGGAACAGGCAGCGGGAGGAGCAGGAGCATGGGGAGGCAGAGGATGAGCCAGAGTACGATGAGCCCCCCAGTCTCCCCCCGCGTTCAGATGACctgctggaggaggaagagggagatgCAGATTATGAAAACCTAGGGGAGCCTGAGACTCCTCCACACCTCTTCCCACAGACCACCCCACTGACAGCTGACGGCGATTACGAGGAGATGCCAGGGGGGTTGTCAGCAAAGGCACTGTATGACTACCAGGGAGAAGGTGACGATGAGATCTCATTCGAGCCAGATGACATCATCACGGGGATCGACATGGTGGACGAGTCGTGGTGGCGCGGTCACTGCAGGGGCCGGCATGGCCTCTTCCCCGCCTCCTACGTGGAGCTCATACAGTGATGggtgctgtctctctctcactctgtctccaATGTGTTGCAGTGTTTCAGTCTCTTTCACTCCCCCCTTTGCTTGCTTTTAAAATTCCTTTTTGTATGCAGATTCAAAAAGTACTTATTACTGACGACAAAATttgtcattaaaacattaaatgactGATAACACAAACAGTTAAAAACACAGATCGATACCTTTcctgtctctttttctttctgtctcacATCTCTGCTCATTTATTTACTATTCCCAGACTCACTCTGTTTGTCACTCTCTTGTGATGACCTGGCTCTCTGTTTCAGGGGAAAGTGTAAAATGACAAAGAGGAACCATCGCTCGATCACTGATTCCTGTGTACTTGTTTCTGTGCCTTAAAAAAACCccacaaatttaaatatttttgtatttccaaatgttttcagGCACTTCCCTGTGGAGGGTTAATAGAGGACTGAACACCCTCAGTGCCTGCAGACATTTACACTATTGTTTCGCAACCCTGTCCTGGAGTCTCCAGTGTCTTTTAGTATAGTTTTTAACCAAAGTATATCCAACTCTTTCAACAGTTGAGAATAAATAGgccaaattaagcaaattaaggGAGTTGACAAGAAAGGtgctttataaattaaataattgatggaTTAATTGAGAGCCCAACTGGAAGTCAATCCAGGGAGTGGGCAGGCAGTATGGGCTATGTTGCATAACTGGGTCAGCACTTACACTTcaaattttagtttttcaaaacaatgtacaCAGGTTTACTGAAATTATACTGCCGTTTTCTCAAAActataacacaaaacaaaaaaccgaCACCATACTGGCCAAACTGTCTCTGGCTGGGTCAGGCTAGAGGTTTTTGTCTACATCACAGGCAATGTTTTCCTTGAGCAGGCAGCGTGGGAAATACCCCCTGATATGCCTTATCCACTTCTGGCAGGACTCCATAAATGTGTCCCCACAGGCCTCCTCCAAAGCCTGGAGAAGGTTTTCCCATGATAGACCTTCCACTGCCATGCTGAGAAAAACTCCTCTATGCGGTCGAGGAATGGTTTGTAGGATGGAAGAAACAGATTAGAGACAATGAGTTGTCATTGAACCAGTTACAGACCAGAGCAGCATAGAAACACATTGTCCCAAATGACAATGTATTGGGGCTACTCTGGCCGCCCTGGCTCCCTTTGCCCCTGTCGGACCAGAGCATCCCGTGGACCATCAAGGAATGCGAGCACATGGCCTGTGTTATATGGGTGGCATGGTGGTCGAGGACACCATGGTGCCCAATGGCTGCACAGAGTGATGTTTGCAAAAGACAGGTGAGCTCACCTGTGGCCTGTCTGATTGCTCGTTGAACAAATAAGATTAATGGTGGTTGCACCTTGAGAACAATGTGTTAATACTATTGAGTTTTAGTAATTGGAGTTTGGTATATTGAATTGCAATGCTTTCTCCATGAACACATGAGGTGTCACTGATAAAGATTGTGCTTTGTTAAGAGAACTGTGTGTTGGGTTTAgcaattaatctgaaatgtttgtGAAAGCAGGTAAACAATGCTtaaattgtattgaaattttctttattttggtaTCTAAATTAATGGTTTGAGATATTGTTTTCACTAGCTTCAGTCTCTTACTTGTGTTAACTTTATTTTCTAACAGAACCAGTAACAATAAAGACAATATAGTTTTgaatcagta

Function

NR:

description
PREDICTED: hematopoietic lineage cell-specific protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012665 True 3020 mRNA 0.48 12 3087436 3100475

Neighbor

gene id symbol gene type direction distance location
AMCG00012664 NA coding downstream 124947 2921701 ~ 2962489 (-)
AMCG00012663 NA coding downstream 177190 2877768 ~ 2910246 (-)
AMCG00012656 NA coding downstream 618939 2436850 ~ 2468497 (-)
AMCG00012655 slc25a3,LOC102778869,LOC105895663 coding downstream 655596 2421608 ~ 2431840 (-)
AMCG00012648 NA coding downstream 742219 2319527 ~ 2345217 (-)
AMCG00012662 NA coding upstream 20725 3121200 ~ 3170801 (-)
AMCG00012666 NA coding upstream 102679 3203154 ~ 3272283 (-)
AMCG00012668 NA coding upstream 249156 3349631 ~ 3421028 (-)
AMCG00012670 NA coding upstream 551732 3652207 ~ 3663213 (-)
AMCG00012674 mapk11,LOC108442323,LOC105020226,LOC103035641,LOC106609456,LOC107725929,LOC100700904,LOC108279456 coding upstream 578204 3678679 ~ 3721400 (-)
G38650 NA non-coding downstream 165774 2916028 ~ 2921662 (-)
G38581 NA non-coding downstream 295912 2778850 ~ 2791524 (-)
G38573 NA non-coding downstream 312234 2726029 ~ 2775202 (-)
G38552 NA non-coding downstream 464247 2622989 ~ 2623189 (-)
G38549 NA non-coding downstream 481668 2605498 ~ 2605768 (-)
G38740 reln non-coding upstream 210857 3311332 ~ 3347647 (-)
G38743 NA non-coding upstream 329461 3429936 ~ 3431336 (-)
G38792 NA non-coding upstream 406362 3506837 ~ 3561850 (-)
G38791 NA non-coding upstream 453910 3554385 ~ 3638866 (-)
G38841 NA non-coding upstream 682685 3783160 ~ 3783391 (-)
G38490 NA other downstream 903273 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 1270236 1578955 ~ 1817200 (-)
G38458 NA other downstream 1310215 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 2547845 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 2951889 6052364 ~ 6063817 (-)
G39487 NA other upstream 3355246 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 3538005 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 4791014 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 6011966 9112441 ~ 9152405 (-)

Expression


Co-expression Network