AMCG00012671


Basic Information

Item Value
gene id AMCG00012671
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3738744 ~ 3754995 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012671
TCGAGCTGCTGATGACGTGGAAAGactgggggaggaaaaaaatgatGGCGGCGTCCATGACAGAGCAGGGAGACGCGACAGGAAGGGTACCACCGGAGAGCTACGACGTCCCTGGTTCCATGGAAAACAGCATTCCGGATTATGTGGCCGAGCTGGTGAAGAATGAGATCGGCGGCGACGTGAAGTCTCTCCGCAGAGTGAGTGGGTTGCTGGAGAGATTGACTGCGGAGAACAGACAGCTGGAGGAGCAGGtgctgtcagtgtgcagtgcagtgccgGTGCGTGTGGCAGAGGCATTGGCAGGGGCGGAGGGAGCCTGGATAAAGCTGCGGGGGCTGCTGGGCCAGGAGAGGGCTCTGTCCAACATGCTGCAGCAGCATCTGCAGGGGGCGCAGCACTGGGCTGACCAGCTGGATCCTCTGTTGGACCAACTgaccctcacacacactcacctccTCTACCTGCGCTGCCTGGCACGCATCGAGGATCTCAGTGACAGTATCCAGCAATTCCTGATGACCAGCAGTGTGTGGGAGGCAGCAGGGGCTCTGAGCCAGCTGGCTGCGCTGGACCTGGGGTTGCGTGACTCTGGCTGCTCCCACTTGTGTGCCTTCCTTAGAGATACCCTGCAGTTCTGGCACCGCATCCTGAGGGACAGGCTGGCCAGgtctgcgttgattTTGAGGAAGTGTTGACGCAGCTGCATTGGCCTTTCATATCTCCCCCTACTTCTCTGGAGCCCCCTGCCAACGCTCCAGAGCTCTACAGTCAGCTGGAGCTGCTGATCACTCAGCTGCTGTCCCTGCAGGCCTCTGATGATTTGGTGTCAGAGGCAAAGCAGCTGCCCCTCCAGCCAGggctgccccctgcccccccacttCCCCTGCCTGTGCAAATCATGCTGCAGCCCCTCAGCAAGAGGTTCAGATACCACTTTACCGGTAGCCGGCAGACCAACACACTGAGCAAGcctGAGTGGTACCTGACTCAGGTCCTGATGTGGATGGGGAATCACTCTGCCTTCATGGAGCTGAAGATCCAGCCCATTCTGGACCGGGCCGGCATCAAAATCAATGCACGGGTAGAGTTGTTCCGGGGGCTGCTGTCCCTGGCACTGGAGAAGCTGTCTAGCGATACCCGTCGACTGCTGTTCGATGACGCTCTATTTTGCCACCTGGTGGACGAGGTGCTGCAGTTCGAGCGTGAGCTGCGTGGGACCCAAGCCTACCCCCCTGCCTTGCCTGGGGCACTGCACGTGCTGCTGGAGCACACTGTCTTCCAGAAGTGGCTCACCGTTGAGAGGAAGTTGGCTCTGGAAAAGGTGGATGCCCTGCTGACCGCAGAAGGAGCGTGGTCATCTCAGTACCGTGACATCGCTGATGTGGATGAGCTGAAGGTGCCGGACTGTGCAGAGACATTCATGACCCTGCTGCTGGTCATCACAGACCGGTACCGCTTATTGCCCTGCCCGCGATCCCAGCTTAGTTTCCTGGCACTGCAGAGGGAGCTAGTGGACGATTTCCGGATCCGCCTGACCCAGGTGATGAAAGAGGAGAGTCGTAATCCATTGGGCCAACGCTACTGTGCTGTACTCAACGCTGCTCACTACACCAGCACTGTGCTTGCAGACTGGGCAGACAATGTGTTCTtcctgcagctgcagcaggcAGCAGTGGCTGAGGGGGAGGAGGTGCTGGGGCAGCTGGGCATTGCAGAGGCAGGGCGTCTGGCCTCTCTGGAGGGATCGGTTTTCGATGGGCtactggggctgctggagcgcCTGCGAGGAGACATGTTGGCACGTCTGTTGGACGCCATCATGAGGGACATCAGAGACAAGGCCCAGCCCTACTGCAGAGACAGGTGGTTGTCTCTGCCCTCCCAGTTGGACCAGGCCACCATGTCTCTGTCCAGCTCGGCATGTCCCATGATGCTTTGTTTCCGCGACCATCTGCTCCAGCTGCAGCAGCTACTCTGTCTGCCACTGTTCCAGAGTTGCTGGCAGGGCCTGGCTGAGAGACTGGATCTCTTCATATACCAGGAGGTGATTCTCTCCAATCACTTTAATGAGGGCGGTGCATCACAGCTACAATTTGACATGACCCGGAACCTGTTCCCTCTGTTTGGACACTACTGCAAGAGACCAGAAAACTACTTCAAACATGTGAAGGAGGCCTGTCTTGTGCTGTGTCTCACTGTGGGTTCATCTCTGCTGTTGCGTGATGTGCTGCAGCAACAGGTCAGCGCTGACTCCAGGCAGCCGTCAGCAGTGGCAGCCCTGAACGAGCTGGGTGTGTTCCGCCTGTCACCAGGAGACGTGCTGATCCTACTCAACCTGCGCACACACTGGCCTGGGCAATAACCATGGCAACACCTGGCCCCAGCATCAGTTTCCATGGTGACCACTGTCTTAGGCATTACCCATGGAAACAACTGGCCATGGCCCAAGCAGCAACTGCACCAACCACTAACCCTTTCGTTAACCACGGCATAATTTGACATGAGAAGAATCCTcaggcaacaacaacaactggcCCAGTTGTAACTATAGTAAGGTTCAATAAGTGAGCAGGCCAGCCACACTGTTCTATTAATTGAAAGCTGCCATTCAAACATcaattgtaaatacaaaataaat

Function

GO: NA

KEGG:

id description
K20474 RINT1, TIP20; RAD50-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012671 True 2638 mRNA 0.57 13 3738744 3754995

Neighbor

gene id symbol gene type direction distance location
AMCG00012672 NA coding downstream 9098 3727446 ~ 3729646 (-)
AMCG00012674 mapk11,LOC108442323,LOC105020226,LOC103035641,LOC106609456,LOC107725929,LOC100700904,LOC108279456 coding downstream 17344 3678679 ~ 3721400 (-)
AMCG00012670 NA coding downstream 75531 3652207 ~ 3663213 (-)
AMCG00012668 NA coding downstream 317716 3349631 ~ 3421028 (-)
AMCG00012666 NA coding downstream 466461 3203154 ~ 3272283 (-)
AMCG00012673 LOC106910051 coding upstream 2100 3757095 ~ 3772987 (-)
AMCG00012676 srpk2,LOC107552422 coding upstream 107053 3862048 ~ 3863424 (-)
AMCG00012677 usf2,LOC101066260 coding upstream 225795 3980790 ~ 3990090 (-)
AMCG00012678 usf2,LOC105007924 coding upstream 260177 4015172 ~ 4024403 (-)
AMCG00012682 NA coding upstream 549000 4303995 ~ 4308720 (-)
G38791 NA non-coding downstream 99878 3554385 ~ 3638866 (-)
G38792 NA non-coding downstream 176894 3506837 ~ 3561850 (-)
G38743 NA non-coding downstream 307408 3429936 ~ 3431336 (-)
G38740 reln non-coding downstream 391097 3311332 ~ 3347647 (-)
G38650 NA non-coding downstream 817082 2916028 ~ 2921662 (-)
G38841 NA non-coding upstream 28165 3783160 ~ 3783391 (-)
G38842 NA non-coding upstream 28809 3783804 ~ 3784050 (-)
G38909 NA non-coding upstream 219358 3974353 ~ 3976596 (-)
G38910 NA non-coding upstream 282444 4037439 ~ 4096741 (-)
G38965 NA non-coding upstream 372012 4127007 ~ 4517632 (-)
G38490 NA other downstream 1554581 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 1921544 1578955 ~ 1817200 (-)
G38458 NA other downstream 1961523 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 3199153 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 2297369 6052364 ~ 6063817 (-)
G39487 NA other upstream 2700726 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 2883485 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 4136494 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 5357446 9112441 ~ 9152405 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028715 rint1 coding NC_007115.7 CM002888.2 18500012 ~ 18512550 (-)
grasscarp (Ctenopharyngodon idella) CI01000020_00892454_00900973 RINT1 coding CI01000020 null 892454 ~ 901051 (+)