AMCG00012673 (LOC106910051)


Basic Information

Item Value
gene id AMCG00012673
gene name LOC106910051
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3757095 ~ 3772987 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012673
AGCGGAGGCGCACGTGTTTCCTTGCAGCTACAGAACAAACTGGGGCCTCGCGTACTGTGCAGACTGAGAGCTGCGAGCTCGAGCTTGATAAGTGCTGTGCACATTCTCCCTGTTGTTAGGCTGCACCCCTGTGACCCCCCCTGCCTGAGAAGAGTGCCCCTGAGACGGAACAGAGATCTAAGCATCCTTTGTACAGCACATCCTGTGTGTGTCCACAATCCCTACCGCATTTCTCTCCACTGTCTACTGCCCCTGAGCACCCTATGGAGGTGGCAGAGTCCACAGTGCCCCTCCCCACAAGGGAGAAGAGGTCCTGTCCTGAGGAGGAGACCCCCTACACCCCCAAGAGGGTCAGAGTGGAGGGGGAGGAGATTGGGGGGAGAGAAGAGAAATGCCCTGAGAATAAAgaaggggaggaggaagagccagGAGAGATAGAGGAGCTACGAAATGGGGTGGAAGAGGATGGTGAGAGCTTTGCAGATATGATGAAACATGGATTAATGGAGAGGGACGTTGGCATCCTGAAGTTCATCAGCGACCATAAAGGATTTTCTGGCATCCTGAAAGaaagGTACTCAGACTTTGTGGTGCACGAGATCAACAAAGAAGGCGTGACGGTGTACTTGGACAACCTGAGCGTGCCTGTGGATACAGAGGACCCCCCTTTGGATGTATCGGCAGTGCTTACCGACCAGCAGAAACAGCAACTGGAGGAGCTGCAGCATTTCAAGAACAAGGAGGGCAGTGTGGCTATAAAGgtAGTtgatgacacaaaggagcaaCGCACTCTGCTGCACCATGCAGTGAAGAGCCTGTTCCCTGGATTGGAGACCAAGACAGAGGAAAGAGAGGGGCTCAAACACATTAGGTCAGATCTGCTGCAGGTAAGACTGGCTCGCCCTGCTCACCGCTgtgggggagagaaggagacagTGACCTGGGGAGGCAGTGGGGCCCCGCGGAAGCACTCCTGGCCCAAGAGCCGGGGCAGTTTCTGTCACTGTGTGCTGTACAAGGAGAACAAGGACACCATGGATGCCATCAATGTTCTCTCTAAGTTCCTCAGaGTGAAGCCTAACCTCATCTCCTACATGGGCACCAAGGATAAGAGAGCCATCACTGTGCAGGAGATTGCTGTGCTCAATGCTCAGAGACTGTCGCATCTCAACAAGTGCCTGATGAACTTCAAACTGGGAAACTTCAGCTACAAGAAACACCCTCTGAAGCTGGGGGAGCTACAGGGGAATCACTTCACTGTGGTGATCAGGAATATCTCTGGCTCTGATCAGCAGGTGGAGCAGGCCATGACCTCCCTAAGGGACACCGGTTTCATCAACTACTACGGCATGCAGCGCTTTGGCACTACAGCTGTGCCCACATACCAGGTTGGCAGGGCAATCCTGCAGAACAGTTGGAAAGAGGTGATGGATTTGATCCTGAAGCCCCGCCCTGGAGCAGAAAAAGGTTATCTGGTGCGTTGCCGGGAGGAGTGGGCCCGGTCCCAGGACCCTGAGGCAGCACTGAGGAAGCTCCCGGTGAAGCGATGTGTGGAGGGGCAGCTGCTGCGTGGCCTGGCTAGACACGGCAAGAACAACATTGTCACTGCCTTTGGTCTGATCCCCCGCAATAACCGGCTGATGTACATACACAGCTATCAGAGCTTCGTATGGAACTGCATGGTGAGCCGACGCATTGAGGCATTCGGGCTGATTGCTGTGCCAGGGGACCTGGTACTGCGTGGAGGCACGGCAGTTCTGCTCTCCAAAGCTGAGGCTGAGAGCCACTCCATACATGACATTGTTATGCCCCTGCCTGGTTTTGATGTCATCTATCCCTCCCACCACATTGGTGAGGGGTACAGGGAGATGCTGAAGGCAGACGGTCTGGACATTGACAACATGCGACACCGCATCCGGGACTACTCCCTGTCCGGAGCCTATCGCCACGTTGTCTTGCGGCCGCATAACGTCAGCTGgcaggtGATCAGCTATGATGACCCTCGCATCCCAATGGTCCACACTGATATTGAGAAGCTGCAGGGGAAGCCCCCCCCTGTATTTCCCACAGAGGGTCAGTATCGTGCCCTGAGAATGGAATTCTCTCTGCCCCCTTCCACCTATGCCACCATGGCCATCAGAGAGGTACTGAAGATGGATACCAGCATCAAGACCCAGACCCAGCTCAACACCACCTGGCTCAACTGAGTACTGAGccgtctgtatatgtgtgtcttgAGCCAGGCTGTGTGCCTGCTTAGTAAATTATGGCAAAACTATTAAgttgaaatatttgtttgattttcctGCACTGGTGAGAGTAGTAATAGTGTGGTGCAAATCCTAGCTGACTCTCTTGTGGGTCGGGTCTCCTGGCAGTGGCCACAGTACAGACAGACCTACTGATGGCACACTGCTGGGGCAGCAGCCAGGGAACAAAGAGGATTAAAAAAATTTGGATCTGAAATCTGTTTAGTAATGTTTTTAACATGtaaagctgttttgttttgtggctgCATAAATGCccttaaataataaactgttcCCTCTCA

Function

NR:

description
PREDICTED: pseudouridylate synthase 7 homolog

GO: NA

KEGG:

id description
K06176 truD, PUS7; tRNA pseudouridine13 synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012673 True 2551 mRNA 0.53 17 3757095 3772987

Neighbor

gene id symbol gene type direction distance location
AMCG00012671 NA coding downstream 2100 3738744 ~ 3754995 (-)
AMCG00012672 NA coding downstream 27449 3727446 ~ 3729646 (-)
AMCG00012674 mapk11,LOC108442323,LOC105020226,LOC103035641,LOC106609456,LOC107725929,LOC100700904,LOC108279456 coding downstream 35695 3678679 ~ 3721400 (-)
AMCG00012670 NA coding downstream 93882 3652207 ~ 3663213 (-)
AMCG00012668 NA coding downstream 336067 3349631 ~ 3421028 (-)
AMCG00012676 srpk2,LOC107552422 coding upstream 89061 3862048 ~ 3863424 (-)
AMCG00012677 usf2,LOC101066260 coding upstream 207803 3980790 ~ 3990090 (-)
AMCG00012678 usf2,LOC105007924 coding upstream 242185 4015172 ~ 4024403 (-)
AMCG00012682 NA coding upstream 531008 4303995 ~ 4308720 (-)
AMCG00012683 NA coding upstream 576120 4349107 ~ 4367364 (-)
G38791 NA non-coding downstream 118229 3554385 ~ 3638866 (-)
G38792 NA non-coding downstream 195245 3506837 ~ 3561850 (-)
G38743 NA non-coding downstream 325759 3429936 ~ 3431336 (-)
G38740 reln non-coding downstream 409448 3311332 ~ 3347647 (-)
G38650 NA non-coding downstream 835433 2916028 ~ 2921662 (-)
G38841 NA non-coding upstream 10173 3783160 ~ 3783391 (-)
G38842 NA non-coding upstream 10817 3783804 ~ 3784050 (-)
G38909 NA non-coding upstream 201366 3974353 ~ 3976596 (-)
G38910 NA non-coding upstream 264452 4037439 ~ 4096741 (-)
G38965 NA non-coding upstream 354020 4127007 ~ 4517632 (-)
G38490 NA other downstream 1572932 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 1939895 1578955 ~ 1817200 (-)
G38458 NA other downstream 1979874 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 3217504 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 2279377 6052364 ~ 6063817 (-)
G39487 NA other upstream 2682734 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 2865493 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 4118502 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 5339454 9112441 ~ 9152405 (-)

Expression


Co-expression Network