AMCG00012676 (srpk2,LOC107552422)


Basic Information

Item Value
gene id AMCG00012676
gene name srpk2,LOC107552422
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 3862048 ~ 3863424 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012676
ATGCTGCCAGAGCAATCGCACAGTTCATCACCAtacagtgcagcacagacagGAGAGCTGCAATCTGACATCACCTCTCTCTTccattctctccctctgtccagGCCTGAACCCCAGCAGAAAGCCCTATCGGTgacctccccacccccacccccacccccgcccccgccACTCCTCCCTGAGCCAGCTGCCCCCCCTGAGCCGGAAGAGGAGATCCTGGGCTCTGACGACGAGGAGCAGGAGGACCCCGCTGACTACTGCAAAGGAGGGTACCACCCAGTGAAGATCGGGGACCTGTTTAATGGGAGGTTTCATGTGATCCGTAAGCTGGGCTGGGGACACTTCTCCACTGTGTGGCTGTGCTGGGACATCCAGGGGAAGCGGTTCGTGGCGATGAAGGTGGTGAAGAGTGCGCAGCACTACACTGAAACGGCACTGGATGAGATCAGGCTGCTTAGATGTACATTTTGA

Function

symbol description
srpk2 Orthologous to human SRPK2 (SRSF protein kinase 2).

NR:

description
PREDICTED: SRSF protein kinase 2 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012676 True 471 mRNA 0.59 4 3862048 3863424

Neighbor

gene id symbol gene type direction distance location
AMCG00012673 LOC106910051 coding downstream 89061 3757095 ~ 3772987 (-)
AMCG00012671 NA coding downstream 107053 3738744 ~ 3754995 (-)
AMCG00012672 NA coding downstream 132402 3727446 ~ 3729646 (-)
AMCG00012674 mapk11,LOC108442323,LOC105020226,LOC103035641,LOC106609456,LOC107725929,LOC100700904,LOC108279456 coding downstream 140648 3678679 ~ 3721400 (-)
AMCG00012670 NA coding downstream 198835 3652207 ~ 3663213 (-)
AMCG00012677 usf2,LOC101066260 coding upstream 117366 3980790 ~ 3990090 (-)
AMCG00012678 usf2,LOC105007924 coding upstream 151748 4015172 ~ 4024403 (-)
AMCG00012682 NA coding upstream 440571 4303995 ~ 4308720 (-)
AMCG00012683 NA coding upstream 485683 4349107 ~ 4367364 (-)
AMCG00012684 NA coding upstream 516449 4379873 ~ 4381284 (-)
G38842 NA non-coding downstream 77998 3783804 ~ 3784050 (-)
G38841 NA non-coding downstream 78657 3783160 ~ 3783391 (-)
G38791 NA non-coding downstream 223182 3554385 ~ 3638866 (-)
G38792 NA non-coding downstream 300198 3506837 ~ 3561850 (-)
G38743 NA non-coding downstream 430712 3429936 ~ 3431336 (-)
G38909 NA non-coding upstream 110929 3974353 ~ 3976596 (-)
G38910 NA non-coding upstream 174015 4037439 ~ 4096741 (-)
G38965 NA non-coding upstream 263583 4127007 ~ 4517632 (-)
G39017 NA non-coding upstream 463659 4327083 ~ 4329635 (-)
G39160 NA non-coding upstream 922270 4785694 ~ 4786528 (-)
G38490 NA other downstream 1677885 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 2044848 1578955 ~ 1817200 (-)
G38458 NA other downstream 2084827 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 3322457 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 2188940 6052364 ~ 6063817 (-)
G39487 NA other upstream 2592297 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 2775056 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 4028065 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 5249017 9112441 ~ 9152405 (-)

Expression


Co-expression Network