AMCG00012681


Basic Information

Item Value
gene id AMCG00012681
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4183875 ~ 4251594 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012681
ATGTCTCGTGCTGATTTTACTAACACATTCCGCTGTCTGAGCCAGGTGCCCTGCCCAGGGGTGTTGGCCAAGGGGTGTGACTCTGGTGAACCCAGTGACCTTGGGGATCATGCTGTGGAGATGCTCCTGAGTCATTGTGCCTCACTAGAGGAGCTGAGAGCTGCTCAGCGACCCACCATGGACCCCCGGGAATTGGCTATGATCATGACTCTGGCCCAGTCAAACCCAAGCCTGTTCCAGTTCCTGAGTGACAGAAAGTCTGTGTCGCAGGAGCTGCAGCGACTGGAGCGGTTCAAGGAGCTCCTGGAAATGAGTGAGgagcagctgagagagagacagagagaggcctGGAAATGCTGGTTGTACAAATACAGGATGCGCCTGGCATTGGAGTGCAAGGGAGAGAGTGATCTTGCAGAGTTGGAGGCCGAAAGAgtgcagCGTGTTCTGAAGGTTATGGAGCAGCCATTCTTGGTGCAGCCTGGGTTGGAGGCTCCAGGCTGGCTTGGCCGAACAGGGGTGGCAGAGGGGGGAGATGAGAGACTAGAGAGGGATGTGGttgaggaggaggggggagaggtggaggggaGTCCCAAGAGTGTGGTTAGGTCCTAA
>TU48518
CAATCCTAGCGGAatttgtgtataaatacatgcacccTCAAGTATAGACCCTTCAGTACAGAACAAATACGAaccaagaccatccacattacAAAAAAGACAGACGTTTACTTAGGCAAGACGAGACACCGTCTGTATATAATCAAAGAGTAAtctatttagatttatttttacacaatcaATTATCAaggatttcaaaacaaaatcgAAATGAAGACTCTTTTTGTCGCAGTCCTAATTGTCTTACTGTCCGTCGGTGTTCAAAGTGGCGTCTCCTTTCCATTCACTTCGATGGGAATCCAAGAACAAGAGACACAAATAGAGCATACTAGCCAAGCAGAAGTACAGGCATCTGATAATCCAGGGGAAATGGTGCATGGCTATTTGCGGACCAAGAGACAAAGCCACATCTCCCTATGCAGATGGTGCTGTAACTGCTGTAAGAACAAAGGCTGTGGATGGTGCTGTAAGTTTTAGGCAAAAGAAGAACATACGAAAGCTTACAgacgagagaaggccattcgacccatcgtgttcgtatggtgtccattagtaacgaagtgatccaaggatcctgtctagtctgtttttaatgttcccaatttctcagcttcaaccacatcgctggggaatttgttccagattgtaacagtcttctctgttccagagtgaaaaggttcagttccctcagtctctccaagtatgacattccctttagacatggaataagtctggttgctcgcctatgaactgcctctagagcagcgatttctttcttgaagtgtggtgcccagaattGTACACAGTAGTCCAGATGGGGTCTAACTAGGTCTGACTTTAACAGCAACAGACTTTTATCAATAagacacaaaaaacatgttttcctctTGAATGGCTTCGAATGTCACAGAATGTTACAgtgctttttaaacaaatgatgCAATTCTAACTACTACTGTCTATGATTCCGGACCCTGAGGTCTACAATCCATTaggtttcttcttattatttttcagtcagTACCTGctatagattaaattaaatcaaaccacctgctaatagaaaactatagaactatactcagttgcggcttcatttttagtaagatgccactttctcctaatcataaatgtaactgctatgatgtacaggtttgaaGTTTGCGATTAGTGGGtgggtaaaagttttgatttaatccggcccctagtaATGAAATGGTTGCATTGGCTCAGTTAATTAAGTGAGATGTTCAATTAACTACTTAATAATCCAGGAGGAggtaaaaacaatgaaagctCCTGCCCGCAGGCACTGGATTTTGAAGAACATTTCTTAAGTGGTTAAAATAGATACACTGAAAAATAGGTTTTCAGCAAGgcatttgatttgcttttgttaataCTCAAGTGCTCTTAATTACTTATGCTTCCACCTGCAGGTATAAAGTTGGCAAGATGTTTGGCAAACAGAACTCCATTTAATCTGCCCTCAACTAGATTCATAAATGATTGCTTTCCTAAAACCACAAAATCAAGCACATCCATTAATACAGATTCTAAATTAAAATTTCACACAGCTGCATAATCAAGCTAGAGAAGTTCTAAAATTCAGTCCTCAGTAAAGGGTTAATGTTAAAGCTAATCTGTTTTACTAAAAGATTTTATAAAGCAAATAGTTAAGTTAAAGGATCTATGTAATTAAGAGTTCAGCTGGAATAAAACTCGGAGGGAAATACTGCACTTCTGAACAACAGAAACTTAGTGTCCTTTTATCCTGAATTTTATAAGCAAATGGTGATTTCCCTAGTGTTTGTCATCTCTGCATAATATAATAGTATAAAGGTATAAACTAACCTTGGCCAACTCTGGTCCTTGATTCTCATTCGGGCTGTTTATATCAGTCACCCTTAAATAATTTGTTACTAATAAACtgcaaataatgtaattatgacAACCTGTTGGCCAGAAACCTTGTTTAATGATGTAGGTTGAAGAAGCTTTTGAAAGTAATTAGTCCACATTGAACTTCCCAGGAACAGAATTGCCAGCTtctatacagttttttttttttagcctttATGAATTGATAATTAACATGGCCAATAAAACACTCTGCATAGTAGTTGCTCTCCATAACCAGGATTGGCCATACAATCTAATCTCTTAAAGTATAGTAGCCAATTATGGTTATATAATATTACCATGACAATCTTTGGGTatctttatattgtatataatagaACATGGAAATGTCTCCTATTTTCTCTGCACtagctatgtttcttttgtaaatacACTTTGGgagtttattttaacacattaaaatttAATAGAGATGATGTGTAATAGCATGAAGCTTTCTTATTTTCATaagtttaaatttattttgcttttatattacTATGTAACTATCTTTATATCGATGTTCTTAGTATTTCATATGCAAAACTGTTACAATTTGTAATACTTTTgtaactataaatatataaactataatgTGCCAAATAAAGTGTAGGGGAtaccaattattttaatacctAGCTGctatctgtatgtctgtctatctatctgcaTACTTTACTTGAATATGCTCATGTTCTTAAGTAGTTACATTTTCAGTAACTTTTTCttgaaattaaatctaaaatatgtgGACCTGCGAACGGGGAGGAGACATGTTTTGCTGCCATGGCTTCCGAGATGGGTGtgcaagaaaaatgttttgagaactgatTGTCTGTCTGCTACAATATGTAacctatattatattatttatacctGTATACCTTTACTGTGTGATGGCATTAAACTAATACTGTTCCTACTATGAATTTAGCTTATATAATGGCATATAGGCTGTATAATAAACATTGGTTTGTGGA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012681 False 615 mRNA 0.57 6 4183875 4244236
TU48518 True 2882 lncRNA 0.35 3 4243999 4251594

Neighbor

gene id symbol gene type direction distance location
AMCG00012680 NA coding upstream 793 4161500 ~ 4183082 (+)
AMCG00012679 trabd coding upstream 25494 4134588 ~ 4158381 (+)
AMCG00012675 LOC108428417 coding upstream 283314 3886138 ~ 3900561 (+)
AMCG00012669 NA coding upstream 572700 3586384 ~ 3611175 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding upstream 705948 3469070 ~ 3477927 (+)
AMCG00012687 actr6,arp6 coding downstream 62288 4313882 ~ 4319599 (+)
AMCG00012686 NA coding downstream 69379 4320973 ~ 4329154 (+)
AMCG00012685 scyl2,LOC106576457,LOC107597030 coding downstream 78077 4329671 ~ 4348756 (+)
AMCG00012700 pah,LOC107744915,LOC107695873 coding downstream 287430 4539024 ~ 4577184 (+)
AMCG00012706 NA coding downstream 342498 4594092 ~ 4600032 (+)
G38886 NA non-coding upstream 207258 3974365 ~ 3976617 (+)
G38882 NA non-coding upstream 221302 3962363 ~ 3962573 (+)
G38845 LOC103376870 non-coding upstream 301457 3795081 ~ 3882418 (+)
G38843 NA non-coding upstream 390101 3791476 ~ 3793774 (+)
G38838 NA non-coding upstream 411637 3770836 ~ 3772238 (+)
G38964 NA non-coding downstream 265542 4517136 ~ 4517631 (+)
G39186 NA non-coding downstream 697646 4949240 ~ 4955867 (+)
G39193 NA non-coding downstream 785953 5037547 ~ 5074126 (+)
G39279 NA non-coding downstream 1185239 5436833 ~ 5437162 (+)
G39321 LOC100846954 non-coding downstream 1396180 5647774 ~ 5648107 (+)
AMCG00012641 NA other upstream 2602487 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 3344609 778908 ~ 839266 (+)
G38954 NA other downstream 118719 4370313 ~ 4373574 (+)
G39297 NA other downstream 1300823 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 1556252 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 1801554 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 2224655 6476249 ~ 6517983 (+)

Expression


Co-expression Network