AMCG00012683


Basic Information

Item Value
gene id AMCG00012683
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4349107 ~ 4367364 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012683
GATAAGAAGACGATACATCGATTGAGGCAACCATTGGAATTCACACAcaattcagtttcatttaaCCCTCTATTGCacgacttttttttctttccaagataaactaaaattaaatgcctaaacaaatgcatttttaatgcgTGTTGTAATAAAAGTGTTGTTCAGTGTATGATTTATACCTTGCTGTCTTTCACACAACCTGCCACAGATAAACACCGGCGGCGCCAGGTAAACTCGATGACGCTGGTACACAGGTACACTGATTAAGGGGCTGTTGCTAAATTGTGTACTGTAGCTGAAGTGGCTAGGGATCATTTAagataaatcatatttactgaaatgtttctacataggtttgacataaaaataaaattaacaatggaaataatttaGGGGTACGTGCCCCCCCGTACCTCAATGGCTTGACGCCACTGGGTGTTAGGAACACTTAGTACCCAAAAATTGTATTACACCACCTGTTTCTCAGTCTTCAATTGCACTCCTAACTATCCTCACCACGTTACTGCAGGTCCATAGTGTCAAGTTGCTGCTTTTCCAGGGAGCGTTCCTCAACAACAACCTTTCCTTTAACCGGGAGAGTATAATCAAGCTAGAGGAGAAACAGACCTCCAAATCAGCGCGGGATTGTGTCTGGACGTGGCTGGGCTCAATCAAAAGTGAACAAGCATGCAGCTCCAGCGATGACGAAGATAGCAGCGACTCTGATGAGCAACCAGAAAATGAGACACTCCAATCACAACAGGTCACTGCAAGTATGGGAGGAAGTGCCGGCTTTCCCACAATGTAGACAACGAAGAAGATAATGATTCCTCAAATGCAAGGCCCAGGGATAAGCCATACCAATGGCAGATCAAGAGCAAGACACAGTGGTTCAACATAGAGAAGGACTGGATTATTGAAGCACAGTATCCGCTGCCTGATGTCAAAGGCATGAAGCTGTACAACACCAAATTTGGTCTGTCAGCATCTTTCTCTGGGATATCTCTTGGTGGGAAAGTTTGGCAGTTCAGTGATAGCAAAGGAAACTGGAATGACTTCACAAACAAGGTAAGACACATACTGTATGCAAATGCAAGGCCCATTAAGTGCATTGATGCATTCTCTTCATAATCCCCACCCTGATTGCAAGAAATGCATCATATGACTGAAGACTATTCTATATGTAGAGATGTGCAACATTTTTTCTATCAACCTCCACTCTCTTTGTCCTAGGGTTCTTCAAGCCATGATATTGAAAAGGAATACCAGCAGAACAAAAATGGAAGGATGACATTCAAGATCAAATCCACTACATATGAGTTAGATTTCTCAGGAATGACACAGAGGAACAAAGAAACTGGAAAACATCTATCTGTCAGTGGTGGACAATGGTGCATCTTCAGGGTGTGGCAGATGTGACAGCACTTCCTCTGGTGGCTCCGGCCACAATACTGCCTCCTCTGGCGATGGCAGTATCTCTTCCAGCCCTGCTATCGGTTCCTGTGACCACGGCGGCCTCAGCAGTGCCTCTTCCTGCAGTTGCAGCTCCTTGCTTGGCCATGGCAGCATGTCATCCAGCATGTGTGACGTTGACCACAGTAGCACCTCTTTTGAAAACTGCTCATGTTCTTCTAGGGTGTCCTCTGTATTTGGGAGCTTCATCTCCCAATCTAGAAGAGACAGCTGTTAGAAGTGACGACTCTATGTCCTCTTCCAGGGCAACATCTGGCAGGCATTGCTCTCCTTCCCACTCTAAGTCGGTCTTGGGAACACCTCAGCCCTCTTTGGCTTCGAGGCCAGGAACACCTTGGCCCTCACTGGCACACAACGGCTCCTCTCTCTTCGGcacaattaaactaaattatgtttaaattggTCTATTTCCTGGCTTCTTTTATTCCACACAATTTCCAGCAACCCCATATTCCCTGCGGCTATTAAAGATGGTTCAGCTACACGTCACTTGCTGTAAACCCAGTTAATATGCTATTTTATCAGggaatgtattattacaatgtgGGCTACTTCCTTATTGCAGTTCGGAAATTACTGTTTTAGTATCTTCAAGTTAGGTCTACTGTCACACGGTTGTTTTTGTGCACGTTTTGGTATTTTCTAAtctaattgtttattaattaatcgCGTGATTTCTTTACTTTCTAGTTTTGCATATTCACGTGTGGTGTAATTGAGTGTATGAAGTTACATTGCTAATTTCTAGCTTTGATTAAAACGATTTGTatcatacaaaatacagttaacATTAATTAGAAAAAGGATGTACACTTAATTATTTCACCTCAAAATATGAGTCCTCACACCTGCTTACACTTTCCACCTCACATACACTAACTTCGAAACGTAAAATGCCGAGGAAAGTATAAATAAAACTCCAGCCATAGCCACGCCTCTTCTCTGAGAATGACATTtgggaagagaaaagaaagtgaaaggGTCGGACTCGTCTCAGCTGTTTCAGCTCTGACGAAGCCACAGTTGATGCTGGACGAGCGGAACTGAAAAtgtttggTGCCGCTTTTAATGAGAGCCTGCAGTTTGAAGATTCAtatgatggtgatgatggaGATGTACAGAACCAGACCTCCTCAGCTGGGGGAAAGCACTATCAATGGATGCTTCAAGATACATGGCAGTGGTTGAACATCAGCCATGACGATGTGATTGAAACACACTACTGCCAACCAGGAGCAAAAGGGATCTCACTTTTCACTTCAGACTATGGccgggtttttctggattttgacACAATGAAGGTACAAGACACTCAGCTGGGTCTCTCCCGTCATGTCTCGTTGTCCGGGGGTGACACAGAGGAGTATTTGTGGTACTACCTGGATAACAGACGCTGGTATGAATATGGTGCTCAGGGGACTTCCAGTAGCAAATCATCGGTCACAAGCCCTGACGTGGAGCAGCAGTACACTCTCAACCCAAATGGTTCTTGCCCTTTCATTGTGGGGAATGCATCCTACTGCATTGATTTTACAGAGGTCACTTACCCATTGttgtgctgctgcagtgtgaCTGGCCCTTTACACACCTCTGTGGTGACGTCGCCCCCTGCTGGTGTTTGGAAGTGGGAGTTCCAAGGAGTGGATGGAGTATGGACTGAGTATGGATTGAAAAATATTCAAGGAGTGGCAGGCTCTGTGAACAGTGATGATATTGAGAGGAACTATCAGCTCAGCCCCCAGGGAAAGATGCAGTTCAAAGCAGGCAGATTTAGCTACACTCTGGACTTCCAGTGCTCAGTAAGCAGTGATGATATTGAGAGAATCTTCCAGCAGAACCCCCAGGGGCAGGTCCAGTTCACAGCGGGGAGGTTCAGCTACACTCTGGACTTCTCAGCCATGAGACAGAAGAACCTGCAAACCTCCAAAACTCGACCTGTCCGCCGGCTCCAGCAGTAGCCCCTGCTGTTTCAAGTCATGTCTTTGGAGAGATGCACAGAATTGCCCAAAGTGATCTACACTATTCCCCTGGTATTCTGCCAAACCAGTTGCATCGTGAGACACTTCGCTGTTTGTTCTCACTATAAACAACAGTGCCacaaatttatataaaaataaaataaaattgtgggCTATGTCTCTTAATATAACAGTTCTAGATAGTCCACCAGTACAGCAAGTACAGTGCAGTCACAAGGTTTCAAACACACCGTTTAGAAAGCTGGAAGTTTCTAATTGCCTTATAGAAACCAATGGCAAATCTCTCCAACACAATGATATTCCAATTTACACTCCGCCGGCAGCTGGAGCACTTGACACATGAGTCACTGCCTGGAGTGGCATTAGTCACAATGagaatgggaaaaaatatatataatcgtGATCTCAATGTAGAACGGAAACCCAGACTGCTCAATTTGATTTTTGGGAGAATGTAGTGGCGATAACTAAGATACAAGGAACTTGCGCTGCACTGTGCTTAGCTTCTGCTTGTTCAGATGCTTCATTATTGCCAAGGTTTTTTTTGACTACTATATAAGAATCTTACTGCTCTGTTTTCATTACATAACTTACTAAATGGCAGGGATAAAAAGtctaatttattatttaggGTTTTCCTTTTGGGCCAgaatttgaaatggttttaattcATAATCTCCAAGCCTTGATGGCACTGGAATGTAAAGGCCAGATTTTGACTTTCTGCTTCTGGTTTATTCATAAAgtcaattgttttaaaaatgttttttgaagcTGGCGATGTGCTGACcattacatgtttacatgtttacataaaacattaggCAAATCTGCATCTGAGACAGCTACCAGAACTAAGGtttacatattgaaaaaataattaataaatgaaggaaaacaagTTTAAAGTTGCCTACTTTTAATACTGCCAAATAACAGTTTATAATTTTGTTCTGCcaattttgagaaaataaatgtctcttCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012683 True 4439 mRNA 0.43 16 4349107 4367364

Neighbor

gene id symbol gene type direction distance location
AMCG00012682 NA coding downstream 40387 4303995 ~ 4308720 (-)
AMCG00012678 usf2,LOC105007924 coding downstream 324704 4015172 ~ 4024403 (-)
AMCG00012677 usf2,LOC101066260 coding downstream 359017 3980790 ~ 3990090 (-)
AMCG00012676 srpk2,LOC107552422 coding downstream 485683 3862048 ~ 3863424 (-)
AMCG00012673 LOC106910051 coding downstream 576120 3757095 ~ 3772987 (-)
AMCG00012684 NA coding upstream 12509 4379873 ~ 4381284 (-)
AMCG00012688 ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950 coding upstream 140263 4507627 ~ 4508220 (-)
AMCG00012690 NA coding upstream 256551 4623915 ~ 4642672 (-)
AMCG00012691 NA coding upstream 317552 4684916 ~ 4696006 (-)
AMCG00012689 LOC107744925,LOC107664854,LOC107588513,LOC107590206,LOC107695881,LOC107725616 coding upstream 393321 4760685 ~ 4772958 (-)
G39017 NA non-coding downstream 19472 4327083 ~ 4329635 (-)
G38910 NA non-coding downstream 252366 4037439 ~ 4096741 (-)
G38909 NA non-coding downstream 372511 3974353 ~ 3976596 (-)
G38842 NA non-coding downstream 565057 3783804 ~ 3784050 (-)
G38841 NA non-coding downstream 565716 3783160 ~ 3783391 (-)
G39160 NA non-coding upstream 418330 4785694 ~ 4786528 (-)
G39174 NA non-coding upstream 546639 4914003 ~ 4916594 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding upstream 562424 4929788 ~ 4930753 (-)
G39189 NA non-coding upstream 563880 4931244 ~ 5006607 (-)
G39231 med21,LOC102798687 non-coding upstream 839240 5206604 ~ 5209859 (-)
G38490 NA other downstream 2164944 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 2531907 1578955 ~ 1817200 (-)
G38458 NA other downstream 2571886 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 3809516 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 1685000 6052364 ~ 6063817 (-)
G39487 NA other upstream 2088357 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 2271116 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 3524125 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 4745077 9112441 ~ 9152405 (-)

Expression


Co-expression Network