AMCG00012684


Basic Information

Item Value
gene id AMCG00012684
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4379873 ~ 4381284 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012684
TTGAAGGGGAATTGCAAAAAGGGCAAGAGGTGTCATTTGCAACACATCTACTCCCATGGCTCCCCATCATCCTCTGATGAAGATGAGAGGGGCAGGCGGAGGCGCTCTTCGTCCACAGACCAAGACAGCCCTGATGGCAAACCATATAGGTGGCAGATAAATGCtggagatggatggatggatattgaCAATGACTTTATTATAGAGGCTCAGTACTCACAGCCTGCTGCTAAAGGGATCAAACTGTACAACACAATATATGGAGCAATCTCTATAGATTTTAATCAAATGAAGGTCTTAAAGAAAAGAATAAGAGTACGACGCAAGAGTTCGGACACAGCTGACCAAGAAAATGAGTGGCTGTGGTATTACTGTGGAAAACATCGCTGGACCCTGTTTGGAGAG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012684 True 405 mRNA 0.45 3 4379873 4381284

Neighbor

gene id symbol gene type direction distance location
AMCG00012683 NA coding downstream 12509 4349107 ~ 4367364 (-)
AMCG00012682 NA coding downstream 71153 4303995 ~ 4308720 (-)
AMCG00012678 usf2,LOC105007924 coding downstream 355470 4015172 ~ 4024403 (-)
AMCG00012677 usf2,LOC101066260 coding downstream 389783 3980790 ~ 3990090 (-)
AMCG00012676 srpk2,LOC107552422 coding downstream 516449 3862048 ~ 3863424 (-)
AMCG00012688 ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950 coding upstream 126343 4507627 ~ 4508220 (-)
AMCG00012690 NA coding upstream 242631 4623915 ~ 4642672 (-)
AMCG00012691 NA coding upstream 303632 4684916 ~ 4696006 (-)
AMCG00012689 LOC107744925,LOC107664854,LOC107588513,LOC107590206,LOC107695881,LOC107725616 coding upstream 379401 4760685 ~ 4772958 (-)
AMCG00012693 mybpc1 coding upstream 406250 4787534 ~ 4827776 (-)
G39017 NA non-coding downstream 50238 4327083 ~ 4329635 (-)
G38910 NA non-coding downstream 283132 4037439 ~ 4096741 (-)
G38909 NA non-coding downstream 403277 3974353 ~ 3976596 (-)
G38842 NA non-coding downstream 595823 3783804 ~ 3784050 (-)
G38841 NA non-coding downstream 596482 3783160 ~ 3783391 (-)
G39160 NA non-coding upstream 404410 4785694 ~ 4786528 (-)
G39174 NA non-coding upstream 532719 4914003 ~ 4916594 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding upstream 548504 4929788 ~ 4930753 (-)
G39189 NA non-coding upstream 549960 4931244 ~ 5006607 (-)
G39231 med21,LOC102798687 non-coding upstream 825320 5206604 ~ 5209859 (-)
G38490 NA other downstream 2195710 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 2562673 1578955 ~ 1817200 (-)
G38458 NA other downstream 2602652 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 3840282 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 1671080 6052364 ~ 6063817 (-)
G39487 NA other upstream 2074437 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 2257196 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 3510205 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 4731157 9112441 ~ 9152405 (-)

Expression


Co-expression Network