AMCG00012687 (actr6,arp6)


Basic Information

Item Value
gene id AMCG00012687
gene name actr6,arp6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4313882 ~ 4319599 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012687
GGAGTACCGACATCTGAAATATGATTGGTCGAAGACGGAAAGCCTGAAAACGAGCAAAGAAACCCCAGATTAACATGTTAACGTGTGTTAATGTGAAGTTTCTCATGTGGATATGACGACTCTTGTTCTTGATAATGGAGCCTACACGGCTAAAATAGGATACAGCCACGAGAACGTAAGTGTCATTCCTAATTGCCAGTTTCGCTCAAAAACGGCGAGACTGAAGACCTTTACTGCCAACCAGATTGATGAAATAAAAGATCCATCTGGGCTTTTCTATATCCTGCCCTTTCAGAAGgttgaCTTTGCAGACACAAGTATAGTGATCACGGAACCATATTTTAACTTCACTTCAATCCAGGAGTCCATGAATGAAATATTGTTCGAAGAGTATCAGTTTCAAGCAGCTCTCAGAATTAATGCTGGATCTCTGAGCGCACACAAATACTTCCAGGAGAATAGTTCAGAGCTCTGCTGCATCGTTGTGGACAGTGGGTACTCCTTTACTCACATTGTCCCCTACTGTcgagggaaaaaaatgaaagatggaATATGCAGattaaatgtTGGTGGAAAACTACTGACCAATCATCTAAAGGAGATCATTTCCTACAGGCAGCTGCATGTTATGGATGAGACTCACGTTATCAACCAGGTTAAAGAAGACGTGTGTTATGTGTCCCAGGACTTCTATAAGGACATGGCAGTGGCTCAGttaaagggaaaagaaaatactgtcATGAGAGACTATGTGCTTCCAGATTTCAGCACCATCAAGAAGGGATTTTGCAAGCCACTGGAAGAGATGAATTTCACTGGGAAATGCAAAACTGGGGAGCAGATACTGCGACTGACCAATGAGAGGTTTGCTGTTCCTGAAACGGCCTTCCACCCATCTGACATTGGGATTCAAGAAATGGGGATTCCAGAGGCCCTGGTCAACTCTGTCCAAAACCTACCTGAAGAAATGCAGCCCCACTTTTTTAAGAACATTGTTCTCACGGGAGGCAACACCCTCTTCTCTGGATTCAGAGACAGAGTCTACAAGGATGTCCGATCTCTTACTCCAACTGATTTTGATGTGTCTGTAGTTCAACCACAAAATCCAATCTGCTACCCCTGGGAAGGTGGGAAACTGTTATCTGAGAATCCAGACTTTGATGAGATGGTTGTCACCAGAGAAGACTATGAAGAAAATGGACACTGCATATGTGAAGAAAAGTTTGATATTTAACACATTCTCCATGTTGGATACACCCCTGAAAGTGCTTCCATGAGCAGAAGGACTGGAAAAAATGGTGTACAGAAGCTTGATTATACTTAACcagttgttgcttttgtttgcttgtaCATGCAGTTGTGACTGAAACAGAAATTGTGgtttgtaatataaaatgctTACTTGATTGGACTTGTTGCTCCTTTATTTATCACATCAACAAACGggagattttgtttcttttaaacacaTATTCAGTTGGgcaattacaatataattatgaGCGTAtgcatattataattttttattttgtaattctgTGCTTTTGTAGTTCAGCAGGATCCATTGTTACTTTAACCAGACTGAAAAGCAATAAGTTTGACAGAGATAgatggatacaaataaacacattttatgagCCAACAAATATGGATAGATTTGTGTTGGCTCGAcaaataatttgctttgtaTACAACACCTGTTGATGTTTATAACggtcaaatgtttttattgaaatgtaagcagttcaagtccaatgaataacctgaaatggtacaaaggtaagcagtaaactaccagagctttaaaaaaaaaaaaaagtttaagttaccaaaaactgaaagataa

Function

symbol description
actr6 Predicted to enable nucleosome binding activity. Predicted to be involved in histone exchange. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Swr1 complex. Orthologous to human ACTR6 (actin related protein 6).
arp6 Predicted to enable nucleosome binding activity. Involved in histone exchange. Located in chromatin and nucleus. Is expressed in organism. Orthologous to human ACTR6 (actin related protein 6).

NR:

description
PREDICTED: actin-related protein 6

GO: NA

KEGG:

id description
K11662 ACTR6, ARP6; actin-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012687 True 1846 mRNA 0.39 10 4313882 4319599

Neighbor

gene id symbol gene type direction distance location
AMCG00012680 NA coding upstream 130800 4161500 ~ 4183082 (+)
AMCG00012679 trabd coding upstream 155501 4134588 ~ 4158381 (+)
AMCG00012675 LOC108428417 coding upstream 413321 3886138 ~ 3900561 (+)
AMCG00012669 NA coding upstream 702707 3586384 ~ 3611175 (+)
AMCG00012667 LOC102193253,LOC101485328,LOC102216727,LOC107092731,LOC104960979 coding upstream 835955 3469070 ~ 3477927 (+)
AMCG00012686 NA coding downstream 1374 4320973 ~ 4329154 (+)
AMCG00012685 scyl2,LOC106576457,LOC107597030 coding downstream 10072 4329671 ~ 4348756 (+)
AMCG00012700 pah,LOC107744915,LOC107695873 coding downstream 219425 4539024 ~ 4577184 (+)
AMCG00012706 NA coding downstream 274493 4594092 ~ 4600032 (+)
AMCG00012697 NA coding downstream 301921 4621520 ~ 4623236 (+)
G38886 NA non-coding upstream 337265 3974365 ~ 3976617 (+)
G38882 NA non-coding upstream 351309 3962363 ~ 3962573 (+)
G38845 LOC103376870 non-coding upstream 431464 3795081 ~ 3882418 (+)
G38843 NA non-coding upstream 520108 3791476 ~ 3793774 (+)
G38838 NA non-coding upstream 541644 3770836 ~ 3772238 (+)
G38964 NA non-coding downstream 197537 4517136 ~ 4517631 (+)
G39186 NA non-coding downstream 629641 4949240 ~ 4955867 (+)
G39193 NA non-coding downstream 717948 5037547 ~ 5074126 (+)
G39279 NA non-coding downstream 1117234 5436833 ~ 5437162 (+)
G39321 LOC100846954 non-coding downstream 1328175 5647774 ~ 5648107 (+)
AMCG00012681 NA other upstream 62288 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 2732494 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 3474616 778908 ~ 839266 (+)
G38954 NA other downstream 50714 4370313 ~ 4373574 (+)
G39297 NA other downstream 1232818 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 1488247 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 1733549 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 2156650 6476249 ~ 6517983 (+)

Expression


Co-expression Network