AMCG00012692


Basic Information

Item Value
gene id AMCG00012692
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4840227 ~ 4846796 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012692
ATGCAATTGACGTTCTACAGCGCCACTCAGATGGTCCTCAACAGCAAATACAAGTTTTATGAGACCCTGGGAAGCCAGCAGACACCTCTCAGATCCAACTTCACCTACTCCCCTCCCCCAGTCTCTGAAATGCCAGTGTACAACTGTAGTGAACTACCGGGCTGGGTCCACACCATTCCTGAAGGAGGTCTGACACACCCAGTCACCCCAGAGAGTCCACTGGTTTATTCTGTGTTCCCTCAGTCAAGGCCTGGGAAAGGCAGAAAAAAGCTCAGGCTCTACGAATACCTCCATGAAGCTCTGTATGACACCAGCATGGTGGACTCCATTCAGTGGGTGGACAAAGGCAGTGGCACCTTTCAGTTCGTGtccaaaaacaaagagaagttaGCCGAGCGCTGGGGCAAGAGGAAGGGCAACCGCAAGACCATGACCTACCAGAAGATGGCCAGAGCGCTGAGGAACTACAGCCGCACGGGAGAGATCCTGAAAATCCGCAGGAAGCTCACCTATCAGTTCAACCCAGTCATTTTACAGAGACTCAACCCCACTCACACCTCAGCGGCGCGGGAGACACTATACTACCAGTACATCCCAACAGAGCAGGGTTACTACAGCAATGACAATTGGCAGAACTGTTACAACAACTACAGCTGTGACGTGCAGTATGATTTGAACTGTCCACTGACCCAGGCAGACCCCACCAAAATTGGATCCAAAGCAAGCACTGAGCACATTGAGCTCCTTTATCACTGCGTTCTGTTATATAGATTACCATGTTCTCTCCTAATAGTCCTTACTGTTTCAGGAAAGAAGATCCGGCTGTTCCAGTTTCTCTTTGAGATGCTGGAGGACCCTGGCATGGCCCACTGCATATCCTGGGTCCAGCCCTCTTGCGGCATCTTCCAGTTTTCATCGCAGAACAAGGACAAGCTGGCAGAGATGTGGGGCAtgaggaaaggaaataaaaacaccatGACCTACCAGAAAATGTCCCGAGCCCTGAGGAACTATGCCAGGACAGGGGAGATCACCAAAGTGAAAAGGAAACTGACATATCAGTTCAGTCTGATCATCCTGAAGTCACTGCAGAGGATCTCCTGA

Function

GO: NA

KEGG:

id description
K09440 SPIC; transcription factor Spi-C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012692 True 1104 mRNA 0.50 5 4840227 4846796

Neighbor

gene id symbol gene type direction distance location
AMCG00012693 mybpc1 coding downstream 12451 4787534 ~ 4827776 (-)
AMCG00012689 LOC107744925,LOC107664854,LOC107588513,LOC107590206,LOC107695881,LOC107725616 coding downstream 67269 4760685 ~ 4772958 (-)
AMCG00012691 NA coding downstream 144221 4684916 ~ 4696006 (-)
AMCG00012690 NA coding downstream 197555 4623915 ~ 4642672 (-)
AMCG00012688 ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950 coding downstream 332007 4507627 ~ 4508220 (-)
AMCG00012694 utp20,LOC107576235 coding upstream 18073 4864869 ~ 4890898 (-)
AMCG00012705 LOC106609519,LOC106576405 coding upstream 87713 4934509 ~ 4979371 (-)
AMCG00012704 NA coding upstream 149768 4996564 ~ 5005697 (-)
AMCG00012709 gas2l3 coding upstream 226089 5072885 ~ 5094228 (-)
AMCG00012708 NA coding upstream 250525 5097321 ~ 5122506 (-)
G39160 NA non-coding downstream 53699 4785694 ~ 4786528 (-)
G38965 NA non-coding downstream 322595 4127007 ~ 4517632 (-)
G39017 NA non-coding downstream 510592 4327083 ~ 4329635 (-)
G38910 NA non-coding downstream 743486 4037439 ~ 4096741 (-)
G38909 NA non-coding downstream 863631 3974353 ~ 3976596 (-)
G39174 NA non-coding upstream 67207 4914003 ~ 4916594 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding upstream 82992 4929788 ~ 4930753 (-)
G39189 NA non-coding upstream 84448 4931244 ~ 5006607 (-)
G39231 med21,LOC102798687 non-coding upstream 359808 5206604 ~ 5209859 (-)
G39245 NA non-coding upstream 373975 5220771 ~ 5282686 (-)
G38490 NA other downstream 2656064 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3023027 1578955 ~ 1817200 (-)
G38458 NA other downstream 3063006 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 4300636 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 1205568 6052364 ~ 6063817 (-)
G39487 NA other upstream 1608925 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 1791684 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 3044693 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 4265645 9112441 ~ 9152405 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_01395424_01397266 SPIC coding CI01000020 null 1395126 ~ 1397343 (+)