XLOC_006093 (lrrc9)


Basic Information

Item Value
gene id XLOC_006093
gene name lrrc9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31497236 ~ 31514150 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012019
AGTGAACAAACTGGAGAACTACAGGATCTACATGGTTTTCCACCTGCCATCTCTTAAAGCACTGGACGGAGCGGCTGTGgaAATGAGTGAATCAGAAACTGCTAAAGATGTATTTGGAGGACGACTCAATGCAGATATGGTGGCTGAGAAACTGGGCCATACCAACTACAGAGACCTGTCAGAACTCAACCTGCACTCCAGCTCCATCAGgaTGGTGGATCTCACTCCTGCTGATTTGTTTGGTAATTTACGCAGTATTAATCTGGAACACAATAACCTCACCTCCTTCAGCGGTCTCATCTTTCTTCCCAATATTAAGGTTTTGTCTTTAAACTATAACCACGTTGAGTCAATTCTCCCACGTCAAAAAGTTCAGAGTCACATGAGCAACAAGCAGATTCTCTATCATAAAGTTAGTTCCAGTGGATACGGGCAGCAGAACAGCAGACCCAGcagGGAGGGATTAACTGATAATCTGGAGCCTCTGATGTCCAGTTTGGAGGTTTTGCATTTAGGTCATAATGGCATATCTAATCTAATCAATCTACAAATCAGCCGACTGACAAATCTCAGGGCTCTGTTTCTACAAGGTAATGACATCAGTCAGGTGGATGGATTGGATGGTTTACAAAAGCTGCGTGAGCTGGTTCTGGATCGAAATCGGATTAAATCTTTAAGTGAAAACTCATTCTGTGGGCAGGCAGTTCTGCTGGATTTACACCTGAGAGAGAATCGCATCCGGGAACTGAACCACCTGCAGCCGCTCACAGGGCTCCGCAGGCTTTTCTTAGACATGAACAAAATACAGGATATTTCAGAGCTGGAGAAACTGGAGACACTGCCTTCTCTCCTAGAACTTTCTGTAATGGGCAACCCAGTGACACGGCGATCTCTGCACAGGCCGCCAGTGATACTGCATCTGTCCACACTGCAGGTCCTGGATGGAGTAACCGTCAGCTTGGAGGAAAGAACCAGGGCAGAGCTTTTAAATAATGAAGCACAGagTTCTAGTTCAGGTGGTGAAATGACGTTACCCGGTTTAGTACCGATGGTGACACGACCGACTCCTTTAAGAAGTACAGGAATGCACACACTTGTACCTGACCAGCAGGATGACACACACGATACCAGCAGATataAGAAGCAGAGAGCAGTTGCCTCTCTATTACGTGGGGTTCACAGTGACATTAACTTCAGGCAGTTTAGAGGATCTTCCAGTCACTACATGACAGCACTGCAGCAAAGCGGATACAGAGTTCTGTCCACTTTCCCTAACACTGATCCTGAGACCAGGTATCAGTGTCACAGTGGACCCagaccacctcctcctcctcctctgtaACATCAGGGCTATTAAAAGTATGTGTGCCATGAGTTTCAGTTCTGATCTTGTGCATTGTTGTTTACTGAGATTCTCACAT

Function

symbol description
lrrc9 Orthologous to human LRRC9 (leucine rich repeat containing 9).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-080917-56 Orthologous to human LRRC9 (leucine rich repeat containing 9).

Ensembl:

ensembl_id ENSDARG00000054352

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012019 True 1421 mRNA 0.46 11 31497236 31514150

Neighbor

gene id symbol gene type direction distance location
XLOC_006092 lrrc9 coding upstream 2949 31479814 ~ 31494287 (+)
XLOC_006091 lrrc9 coding upstream 17435 31473190 ~ 31479801 (+)
XLOC_006090 tdrd9 coding upstream 73890 31402067 ~ 31423346 (+)
XLOC_006089 METTL18 coding upstream 104367 31390313 ~ 31392869 (+)
XLOC_006088 antxr1d coding upstream 161486 31297016 ~ 31335750 (+)
XLOC_006094 pcnx4 coding downstream 6387 31520537 ~ 31535508 (+)
XLOC_006095 ppm1aa coding downstream 31380 31545530 ~ 31580190 (+)
XLOC_006096 six6a coding downstream 68884 31583034 ~ 31606247 (+)
XLOC_006097 mnat1 coding downstream 134121 31648271 ~ 31681951 (+)
XLOC_006098 slc38a6 coding downstream 173823 31687973 ~ 31707870 (+)
XLOC_006074 NA non-coding upstream 568575 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 660460 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 819593 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 985513 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 1245379 30251741 ~ 30251857 (+)
XLOC_006101 NA non-coding downstream 292370 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 441070 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 591115 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 878233 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1332343 32846493 ~ 32846609 (+)

Expression


Co-expression Network