AMCG00012701


Basic Information

Item Value
gene id AMCG00012701
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4757241 ~ 4761029 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012701
ATGGCGACTGCGGACAGGAAGAAAGCCGGTAAAGCGAGCAAAGGGCCCGAGAGCCCGATCGACCAGCGCCCGTACGAGTTCATTGTGGACGAGGAGAAAAAGGCCCTCAGCGGGTCCGAGGAGGATGTCCTAGAAGCTGACATCAATAAAGCTATGCAAGCTAAGAAGAAGCGCCTGGATGCCTATGCCAAGTCGTCTCTGAAGTCCAGCAATCAGAAGCTGGAGCAGATGTGGAAAACGCAGCAAAACCAAAGACTGAAACTTACCCAAGACTACTCACAGCAGTTCTATTCCGTACTGCAGCAATGGGAGGCAGAGGTGCAGAAATCAGAGGAACAAGAAGAAAAGCTGAACACCTTTGTGCGACAACAGCAAAAATTCTTCCAACAAGCCAGAATAGTACAGAGTCAGAAACTGAAGACCATCAGGCAGATGTATGAGCAGTTTGTAAAGAACACAGAAGAGATGGAGAAGAGTCAAGAAGCTTTCCTAATGGGAGCCCAGACCGAGCTCCGAAAGGAAATGTCTCTGTTGCAGAAGAAAATCATGATGGACACA

Function

GO: NA

KEGG:

id description
K19528 SYCP3; synaptonemal complex protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012701 True 558 mRNA 0.49 5 4757241 4761029

Neighbor

gene id symbol gene type direction distance location
AMCG00012698 gnptab,LOC107593561,LOC107735372,LOC107590211 coding upstream 8937 4721259 ~ 4748304 (+)
AMCG00012703 NA coding upstream 71817 4677618 ~ 4685424 (+)
AMCG00012699 NA coding upstream 82029 4670559 ~ 4675212 (+)
AMCG00012695 NA coding upstream 103325 4650298 ~ 4653916 (+)
AMCG00012697 NA coding upstream 134005 4621520 ~ 4623236 (+)
AMCG00012696 arl1 coding downstream 99697 4860726 ~ 4865767 (+)
AMCG00012702 NA coding downstream 134023 4895052 ~ 4903583 (+)
AMCG00012728 NA coding downstream 284490 5045519 ~ 5068763 (+)
AMCG00012726 fgfr1op2 coding downstream 421273 5182302 ~ 5189320 (+)
AMCG00012724 stk38l coding downstream 474137 5235166 ~ 5243203 (+)
G38964 NA non-coding upstream 239610 4517136 ~ 4517631 (+)
G38886 NA non-coding upstream 780624 3974365 ~ 3976617 (+)
G38882 NA non-coding upstream 794668 3962363 ~ 3962573 (+)
G38845 LOC103376870 non-coding upstream 874823 3795081 ~ 3882418 (+)
G38843 NA non-coding upstream 963467 3791476 ~ 3793774 (+)
G39186 NA non-coding downstream 188211 4949240 ~ 4955867 (+)
G39193 NA non-coding downstream 276518 5037547 ~ 5074126 (+)
G39279 NA non-coding downstream 675804 5436833 ~ 5437162 (+)
G39321 LOC100846954 non-coding downstream 886745 5647774 ~ 5648107 (+)
G39382 NA non-coding downstream 1161585 5922614 ~ 5923023 (+)
G38954 NA other upstream 383667 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 505647 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 3175853 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 3917975 778908 ~ 839266 (+)
G39297 NA other downstream 791388 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 1046817 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 1292119 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 1715220 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 2583421 7344450 ~ 7381559 (+)

Expression


Co-expression Network