AMCG00012705 (LOC106609519,LOC106576405)


Basic Information

Item Value
gene id AMCG00012705
gene name LOC106609519,LOC106576405
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 4934509 ~ 4979371 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012705
tcCTCCATAACAAACAGCGATATAATTTTTCTGAAGTTGCACGCCCCCTGGGAAGTCCTTTGCAGATACGCAGAGCTAATGAACATACGAATGCCTTTCAGGAGAAAAATCTATTTCCTTCACCGACGGTACAAGTTCATGAGCAGgatggagaaacgattaagcaGGTTTCGAGGATGGTTGCCCCGAAAGCCAATGAAGTTTGACAAGGACACACTACCCGATCTGGAGGAGAATGACAGCTATACCGCCCCCTTCAGTCAGCAGAGGATACACCACTTTATTATCCAcaataaagacacatttttcaACAACGCAACAAGGAGCCGGATCGTGCATCACATTTTGCAAAGGGTCAAATATGAAgaaggcaaaaataaaattggacTTAACCGTCTTCTGAGCAATAGTTCATATGAAGCAGCTTTTCCCCTTCATGAGGGGAGTTACAGGAGTAAGAATTCCATAAGGACGCATGGAGCAGAGAACCACAGACACCTGCTTTATGAGTGCTGGGCCTGGTGGGGAGTGTGGTACAAATATCAGCCTCTGGATCTTGTACGGCGATATTTTGGTGAGAAGATTGGTCTGTACTTTGCATGGCTGGGCTGGTACACGGGGATGTTGTTCCCTGCTGCGCTGGTGGGGCTACTGGTGTTTCTGTATGGAGTCTTCACTTTGGAGAACTGCCAAGTCAGTAAAGAAGTCTGCCAAGCAGCAGATATCATAATGTGTCCCTTGTGTGACAAGTACTGTCCTTACATGAGACTGTCCGACAGCTGCGTCTACGCTAAGGTCACTCATCTGTTTGACAATGGAGCAACAGTGTTCTTTGCTGTTTTCATGGCAGTATGGGCGACAGTCTTCCTAGAGTTCTGGAAGCGGAGACGGGCCGTGATCGCCTACGACTGGGACCTGATTgactgggaggaggaggagGAAGAAATCCGCCCTCAGTTTGAAGCCAAATATTCAAAGAAGGAGAGAATGAATCCAATATCTGGGAAACCAGAGCCTTATCAAGCTTTCACAGACAAATGCAGCAGACTGATCGTGTCAGCATCGGGGATATTCTTCATGATCCTAGTGGTGATCGCAGCTGTGTTTGGAATCGTTATCTACCGTGTGGTGACTGTGAGCACTTTCGCGGCCTTTGACTGGGCTTTAATCAGGAATAACTCTCAGGTTGCAACTACAGGGACCGCAGTGTGCATAAACTTCTGCATTATCATGCTGCTGAATGTGTTATATGAAAAAGTTGCCCTTCTTCTTACAAATTTAGAGCAGCCACGTACAGAGTCTGAATGGGAGAACAGctttactttgaaaatgtttctgtttcagtttgtCAATCTGAACAGCTCAACATTTTATATTGCCTTCTTCTTAGGAAGATTCACGGGGCGTCCAGGTGCCTACATGAGGCTCATAAATAGATGGAAACTAGAAGAGTGTCACCCTAGTGGATGCCTTATAGACCTTTGCATGCAGATGGGTATCATCATGGTGCTCAAGCAGACATGGAATAACTTCATGGAGCTTGGTTACCCGCTGATCCAGAACTGGTGGACACGACGGAGGTTGAGACAAGAGCACGGCCACAAAATTAAGGCTAGATTCCCTCAGTGGGAAAAGGACTACAATCTCCAGCCTATGAATGCCTATGGACTGTTTGATGAATACTTGGAGATGATTCTACAGTTTGGCTTCACAACCATATTTGTGGCAGCATTTCCTTTGGCACCAGTGTTAGCCTTATTGAACAACATCATCGAGATCCGCCTAGACGCTTATAAATTTGTTACACAGTGGAGACGGCCTTTAGCCTCAAGAGCCAAAGATATAGgaATCTGGTATGGGATTCTGGAAGGGATAGGAATTCTCTCTGTCATTACAAATGCTTTTGTCATAGCGGTGACCTCCGACTTTATCCCCCGACTGGTCTACGCATATAAATACGGACCATGTGCAGGACAAGGACAAGCCGGAGAAAGGTGTATGGTGGGATATGTAAATGCCAGCTTGTCAATATTCCAAGTGTCAGATTTTGAAAACCGATCCGAACCTGGATCTGATGGAGCAGATATATTTGGTTCACCGATAAAGTACTGCAGATACAGAGATTATAGAGCTTCTCCAAATTCCAAAGAACCCTATGCCTACACTCTGCAGTTCTGGCATGTATTGGCAGCGCGGCTTGCATTCATCATTGTGTTTGAGCACATGGTTTTTACTATCAAAAACCTAATTTCTTACCTGATCCCAGACCTGCCTAAAGACCTGAGGGATCGCATGCGTCGGGAAAAGTACCTGATTCAGGAAATGATGTATGAAGCAGAGCTCGAACGCCTGCAGAAAGAGAGGAACGAGAgaaaaaagaatggcaaatcTCACCACAATGAGTCAAAACCCATGTCCTCGGTTTACGTATTCCTGCTCTGAAGCCCAGTTGCTTCTGGAAAATGAGAAAAGGAACCTCAATGCATGTCAGGAGATGTTTTACAAGGCAGGCTAATCAGCACATTTACTAAGAGGTGTACTGTGAACAATACTGCAATCAACCAATACATGTTAACCGTTTCTAACACTACAAGCATGTTCCAGtcaatgcagcaatgtacaccAATTTGTACTTCGGAGAGACGTTGTATTATCTACCATTTTACAACAGTTTGCTACTTTTCTCAGACGTCGCATCTTCTTCCATTACAGTTTTACATATCTTCAGAGACTGAATGTAAATAGACAAATTGGAAACTTTTGCATAAGTTAATGGTCTGTGCAGTATCATACCATACTCTCTTCCATTGTATCAAAAGGAACTCCTGTTTACAATCTACCTTTTTTTATTTCGAGACCTTTAAAAAAGATTTATGATATGACATATATTGCTTAATTGTACATAGCCAAATATTTAAGAGAATGTagaattttcattaaaattaaggATCAGTTCATGAACATGAAGCCACGTTTACTGCTTGTATATTGTGAtgcaataaatacttaaaaataaatgcatctgaaCTGTACCACTGGG

Function

NR:

description
PREDICTED: anoctamin-4-like isoform X1

GO: NA

KEGG:

id description
K19499 ANO4, TMEM16D; anoctamin-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012705 True 3040 mRNA 0.43 23 4934509 4979371

Neighbor

gene id symbol gene type direction distance location
AMCG00012694 utp20,LOC107576235 coding downstream 43611 4864869 ~ 4890898 (-)
AMCG00012692 NA coding downstream 87713 4840227 ~ 4846796 (-)
AMCG00012693 mybpc1 coding downstream 106733 4787534 ~ 4827776 (-)
AMCG00012689 LOC107744925,LOC107664854,LOC107588513,LOC107590206,LOC107695881,LOC107725616 coding downstream 161551 4760685 ~ 4772958 (-)
AMCG00012691 NA coding downstream 238503 4684916 ~ 4696006 (-)
AMCG00012704 NA coding upstream 17193 4996564 ~ 5005697 (-)
AMCG00012709 gas2l3 coding upstream 93514 5072885 ~ 5094228 (-)
AMCG00012708 NA coding upstream 117950 5097321 ~ 5122506 (-)
AMCG00012707 slc17a8,LOC107553956,LOC107686235,LOC107672209 coding upstream 173904 5153275 ~ 5171222 (-)
AMCG00012710 NA coding upstream 211582 5190953 ~ 5203165 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding downstream 3756 4929788 ~ 4930753 (-)
G39174 NA non-coding downstream 17915 4914003 ~ 4916594 (-)
G39160 NA non-coding downstream 147981 4785694 ~ 4786528 (-)
G38965 NA non-coding downstream 416877 4127007 ~ 4517632 (-)
G39017 NA non-coding downstream 604874 4327083 ~ 4329635 (-)
G39231 med21,LOC102798687 non-coding upstream 227233 5206604 ~ 5209859 (-)
G39245 NA non-coding upstream 241400 5220771 ~ 5282686 (-)
G39246 LOC100846954 non-coding upstream 254791 5234162 ~ 5250471 (-)
G39281 NA non-coding upstream 408822 5388193 ~ 5408760 (-)
G39295 NA non-coding upstream 566463 5545834 ~ 5546069 (-)
G38490 NA other downstream 2750346 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3117309 1578955 ~ 1817200 (-)
G38458 NA other downstream 3157288 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 4394918 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 1072993 6052364 ~ 6063817 (-)
G39487 NA other upstream 1476350 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 1659109 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 2912118 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 4133070 9112441 ~ 9152405 (-)

Expression


Co-expression Network