AMCG00012709 (gas2l3)


Basic Information

Item Value
gene id AMCG00012709
gene name gas2l3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5072885 ~ 5094228 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012709
GCTGTTTCGAACAGGGCTCCCACTGGAGTTCCATGGCGCTGGGAATTAACCGAGCAGGGAATGGAGGGCAACTGACATTTtagggaaaaacaaagcaacgCTTTTACACACTAAACAGTCTGCCGTCACACGTGAAAAGGCATTTTGGAGAGAAAGGTCTAAATGCAGGCGTGGTTTGGGGAGAAGTTTGACCTTCCCGTCCTGAGTCCGCGCAGTCCTCTGACCCCGAGACATGGCCCAGGCTTGGCAGATGTTTTCCAGTATGACCAGTGGCTCTCAGTACGACATGAAGCCACCTTGGTGCCCATGCAGGAAGACTTGGCAATCTGGCTTACTGGCATGTTGGGAGAAGAAGTGAAGGCCGAACGTTTCATGGAGGAATTGGATAATGGAGTCCGACTGTGTCAGCTGATTGGAGTCCTGCAGAATAAGGTGTCTGAATGTTGTCATTCGGATAAGTGGAAGCTCTTTCCCATGAAGAAAGTGCCATGCAAGAAAGACGCCTCTCCAGGCTCCTTCTTTGCTCGTGACAACACTGCGAACTTCCTGTGCTGGTGTAGGTGTGTGGGAGTGGACGAGACGTACCTCTTTGAATCTGAGGGCTTGGTCTTACACAAAGAGCCACGTCAGGTGTGTCTGTGCCTGTTGGAAATTGGACGGATTGTATCCAAATATGGTGTGGATCCCCCAGTCCTAGTTAagctggagaaggagattgaACTGGAAGAGACTCTGCTCATCACCAGAGGACCTACTGTTCCAGTGAAAACCTTCAGTGTGTGCTGTCAACATGGAGACCTTCATGAGGCAGTTCAGCATATCGCACAGGACCCGCCCTGCAACTGCTCACATAGGTTTTCGATAGAGTATTTGTCTGAGGGAAGATACAGACTAGGAGATAAAATCCTTTTTATTAGGATGTTGCATGGAAAGCATGTGATGGTGCGCGTTGGCGGCGGCTGGGACACGCTTCAGGGTTTCTTGCTGAAGTACGACCCCTGCCGAGTGCTACAGTTCAGCATGCTTGAGCAGAAGATCCTGGCCTTTCAGAAGGGAGTGTCTAACCCTCTGCTCAATATCCCAGCTTCACCTGGCCGGTCTCCTCACCCTCCTGCCATGAACCCTTTCTCGGCGGTGCATTTGCCCTCCGCCCCCTCCAAACCCAAGTCTCCTTCCCCAGTCCCCAAGCTCACGACAAACCGAGCTCCCACGTCAGCAATGGCTGCTCAGTCTACTACCAGCACTACTCGACTGGTAAAAAAGCACCAGATTCCCGCCAAGACGTCTCCGTTGACCTCCATGTTAGCTGCAGGCCAACTCCAAAAAGCAAAAAGCTCTCGACCTTCCCCCAAGACCCCCTTAACACTGACTAAAAGTCTAGAGAACAAATCTAGACGCCCTCAGTCGCCCCTGACGAATTCTCCAGTGGTGTCCCGGCTAAATCCCTCCTTGCGTTGTGCCCCCCCCTTGGCAAGGAGCCCGTCCGTTTTCTCCGAGCCGTCTTCCAAGTCTTCTAAACTCACTCCCTCGCTGACCAGATGCTGTCCGACACCTTCCTCGTTATCGGTTTGTTCGGAGCCGATTGGTTCATTTGCATCCATTCAGAGAGTGATTACTAAAAAGGCAGCAGAGCAGCCCCGGAAatctcctgctcctgctgcaaCGCTGGTGTGTCCTCAGAAAAAACGCCTTTCCCAGAGGCGCCCTGGTTCTCCTGCAGCAAGCCTTCGGCTCAACACTCAAGGAGTCAAAACGCTGGAACAGAATGCCCCTTCACTTAGAGTCCGAACCCCAGTCAAACCGGACAATTgcaaaaaataccaaaactTCAAAAAGCGCTCCTGCGTCTTCCACAAGCACAATGAGGTGTCCCTTGTCTGTTGTCAAGATTTCCCAAACAGCCAAAACTCCCGAAATTTCAGCCTGCAGAGCACAGCCAGCAAGCCAGATGCAGGCTCCTGTGAAGGCTTCGCAGAAATC

Function

symbol description
gas2l3 Predicted to enable actin filament binding activity and cytoskeletal anchor activity. Acts upstream of or within cell proliferation in hindbrain ventricular zone and ventricular system development. Located in microtubule. Part of filamentous actin. Is expressed in nervous system and neural tube. Orthologous to human GAS2L3 (growth arrest specific 2 like 3).

NR:

description
PREDICTED: GAS2-like protein 3

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process

KEGG:

id description
K24627 GAS2, GAS2L; growth arrest-specific protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012709 True 1980 mRNA 0.52 9 5072885 5094228

Neighbor

gene id symbol gene type direction distance location
AMCG00012704 NA coding downstream 67188 4996564 ~ 5005697 (-)
AMCG00012705 LOC106609519,LOC106576405 coding downstream 93514 4934509 ~ 4979371 (-)
AMCG00012694 utp20,LOC107576235 coding downstream 181987 4864869 ~ 4890898 (-)
AMCG00012692 NA coding downstream 226089 4840227 ~ 4846796 (-)
AMCG00012693 mybpc1 coding downstream 245109 4787534 ~ 4827776 (-)
AMCG00012708 NA coding upstream 3093 5097321 ~ 5122506 (-)
AMCG00012707 slc17a8,LOC107553956,LOC107686235,LOC107672209 coding upstream 59047 5153275 ~ 5171222 (-)
AMCG00012710 NA coding upstream 96725 5190953 ~ 5203165 (-)
AMCG00012711 NA coding upstream 193800 5288028 ~ 5303893 (-)
AMCG00012712 syt10,LOC106609485 coding upstream 317978 5412206 ~ 5414340 (-)
G39189 NA non-coding downstream 66278 4931244 ~ 5006607 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding downstream 142132 4929788 ~ 4930753 (-)
G39174 NA non-coding downstream 156291 4914003 ~ 4916594 (-)
G39160 NA non-coding downstream 286357 4785694 ~ 4786528 (-)
G38965 NA non-coding downstream 555253 4127007 ~ 4517632 (-)
G39231 med21,LOC102798687 non-coding upstream 112376 5206604 ~ 5209859 (-)
G39245 NA non-coding upstream 126543 5220771 ~ 5282686 (-)
G39246 LOC100846954 non-coding upstream 139934 5234162 ~ 5250471 (-)
G39281 NA non-coding upstream 293965 5388193 ~ 5408760 (-)
G39295 NA non-coding upstream 451606 5545834 ~ 5546069 (-)
G38490 NA other downstream 2888722 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3255685 1578955 ~ 1817200 (-)
G38458 NA other downstream 3295664 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 4533294 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 958136 6052364 ~ 6063817 (-)
G39487 NA other upstream 1361493 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 1544252 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 2797261 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 4018213 9112441 ~ 9152405 (-)

Expression


Co-expression Network