AMCG00012711


Basic Information

Item Value
gene id AMCG00012711
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5288028 ~ 5303893 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012711
GTGCGCCTCTACCTGCTGTAGCTTTAATTGAAGCAACTTCCTCGTTTGTAAATGAGACCTCTGTCAGACCTGTTCAAGCCACACCCGTATCCGTTCAATTCATGAGCAGAAAGGAGTTCAGGACAATATTTGCTACTCTGCTTGGATCCTTTGTCAGAGTCAGGGCTTTTGTTGAGCTGAACAGTCCGTCAGCTATTTGGGGTGTTTGCACTTTTGCTGTACTTTTTTTAGGAAGCGCGGGACTTTTGGAGgtggattgtattatttttcaacatcGACAGGATGATCGATATCGGCTCCCAAACTTTCATCAAGTCGGTTTTGCAGACCAATGCAGTTCAGGCGGAAGACTCCAGTTTAGCATTACCGCTCgaggaaaacataattttgtctACGAACCCTATTAGTGGCAAAACCTCCCGAGTGCAACAGCAAGTGCAGCTGACATTGTCCAGGAAAAGCAAGAAGGGCTTGTCCAATGGCAGTCTTCACTTGCCAGGCATCTCTGAAACcctttacaaatctgaatatggAAAGGACGCTCTGAACATGCTAGAAAAGGTACATTTAACAGAGGGCTATGAAACCAATTATGAGAGCTTAAGCAAATCTGCATCTGCGGGCTATAGACTGACGGACACAATGAGCCGGCCGGCGATGAGGCTGGAAGTCTCCCCGTTTGTCATCCCGGAGATGCAGCGTTCTCAGTTCGGCTTCCGTTCAAGCTACCACGATGGGATGTTCCATGGCGGTGGCGCATACACAATGCCCGTTGCCCAGGCTTTCACAAAGAGTGCGTCCCAGCGTGACAAGGAAAGATCTCGGAGTCTTTCTTGCAGATACGCGCATTCAGAAATCGTAAACAGCAGGAAGTTCGCCATGGCCAGGGCCCCGACCTTCCAAAGGAGCCAGCGTCAAGTGGTAACTAAACAACGTTTTTCCTCGGACGATGGTGTTTTTTTACCCAGCAGCCCCATTAGTCCTGACAGCAGTATGCCCGTCTTCGTGGACGCAGGCCGGGCAGGGGTCAGCATGCGTCAGCAAGCGCGATTTGGAAACTCGTTCCAGACGAATAGGAGCTCTGAGGGGGGCTTGTGGAAATATGGTCTTGTCAGGAGAGAAAGTGGCTTCAAGCAGAATGCAAACCGTGCCTCCTACCCTGCCTCATTGATAAGTATGGAAATTGATGGAAGGAGGGCCTCAGAAGCCAGAGGTTTTTCCACCATGGACCAGCAGAAGTCTGTCAGGGAGTTAAAAAGAAgCAAGTCTGAGGGGCAGGCCATCGAGCTAACGCTGGACAAAGCCGTGGGCTTTCTGTCTCAGGAGAATACTGACTTTCAAGTCTCGGCGGCAAACTTTATCCAGCATCAGTGCTACCTCAGTAGCGAAGCGAAGAGAACGGTGTTTTTCATGCATGGCATCCCCAAGCTAATCAACCTCCTTAAGAGTGACAGCGTGGAGCTTCAGAGGGCAGCCAGTGGAGCCCTTCGCAATATTGTCTTCGAGAACAATGACAACAAGATGGATGTGAAGGAGCAGAATGGGATTCCAGTTGTGCTCAAGGTACTCAAAACCACCAGAGATATGGAAACAAAGAAGCAGCTCACAGGTTTGTTATGGAACTTGTCTTCCCATGACCTCCTGAAAGATCAACTGTCCAGAGAGGCCCTCCAGATTGTCACCGACACCATTATTGTCCCCTGCTCTGGCTTATCAGATGGAGACTACCCAAAAGATGACCTGCTGGCTGATCCAGAAATCTTCTACAATGCCACTGGCTGTTTGAGAAATCTCAGCTCCGCAGGTCCGGAAGGTCGGAAGGCCATGAGGGACTGTGATTCCTTTATCGACTCCCTGGTTCATTACGTGCGGGGCTCCGTGGCCGACCGCAAACCAGATGACAAGTCTGCAGAGAACTGCGTCTGTGTCCTTCACAACCTATCCTACCAGTTGGAAGCTGAACACCCTCATAAATTCAGCAGGGAAATTCGTGAATCGAGGCAAAACCTGGCAATACAAAGAGAAGCACTCGGTTGCTTTGGTTCCAGAAGTACTAAGATTACAGTAACCAAAGAGAGCAGTCTCCCATTCCCAGAAGAGAAGAGCAACCCTCGTGGCGTGGAGTGGCTCTGGAGCCCCATCACCGTCAGGATGTACCTTTCTCTCATCGCCATGAGTAACAGGAAATTCAGTCAGGAGGCATCTCTAGGGGCCCTTCAGAACCTCACTTCAGGAAAAGGAATGGTTTCTGGACATCAGTTCAGTGCACCCCCAAgtGCGCAGCTCTTGCCTGATTTGTTGCTGCTCTTGCCCAACTCGGGCACAAGTACAGATGTTACTGCAGACATGACTGTGTCGGTGTGTTACGTTCTCAACAACCTGGTCCAGAAAGATTCGCAGAATGCTCGAGCCATCCTGAGCAGCGGGGggctgaataaaatattcaacATCAGCACCAAAGAAACCACCTATGGACCCACTAAAGCTGCCATAGCAGCCAGCAATGTACTTCATTCGATGTGGAgacacacagagctgcacagtCTGTACAAAAAGgCTGGATACAAAAAGACTGATTTCATCAACAATGGGATAATAAAAGCAGTCAAATCTACAAGAGACTAGAGTCAACCTGGAAAGAAAGCGAATGTTCAGCAAATTCGGATTGGGTTGAGATTTTGCTATGTCAGAGTCTTGGCAGTGTGGAATATGGTGTGTTATTGAGCAGTAAGGaagaattggg

Function

GO: NA

KEGG:

id description
K12642 PKP2; plakophilin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012711 True 2743 mRNA 0.49 13 5288028 5303893

Neighbor

gene id symbol gene type direction distance location
AMCG00012710 NA coding downstream 84863 5190953 ~ 5203165 (-)
AMCG00012707 slc17a8,LOC107553956,LOC107686235,LOC107672209 coding downstream 116806 5153275 ~ 5171222 (-)
AMCG00012708 NA coding downstream 165522 5097321 ~ 5122506 (-)
AMCG00012709 gas2l3 coding downstream 193800 5072885 ~ 5094228 (-)
AMCG00012704 NA coding downstream 282331 4996564 ~ 5005697 (-)
AMCG00012712 syt10,LOC106609485 coding upstream 108313 5412206 ~ 5414340 (-)
AMCG00012713 syt10 coding upstream 120808 5424701 ~ 5436981 (-)
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding upstream 330572 5634465 ~ 5639532 (-)
AMCG00012716 NA coding upstream 488145 5792038 ~ 5805393 (-)
AMCG00012715 NA coding upstream 526725 5830618 ~ 5831514 (-)
G39245 NA non-coding downstream 5342 5220771 ~ 5282686 (-)
G39246 LOC100846954 non-coding downstream 37557 5234162 ~ 5250471 (-)
G39231 med21,LOC102798687 non-coding downstream 78169 5206604 ~ 5209859 (-)
G39189 NA non-coding downstream 281421 4931244 ~ 5006607 (-)
G39175 LOC106613431,LOC106584099,LOC106573797,LOC106609167 non-coding downstream 357275 4929788 ~ 4930753 (-)
G39281 NA non-coding upstream 84300 5388193 ~ 5408760 (-)
G39295 NA non-coding upstream 241941 5545834 ~ 5546069 (-)
G39371 NA non-coding upstream 474397 5778290 ~ 5812036 (-)
G39377 NA non-coding upstream 512579 5816472 ~ 5895114 (-)
G39443 NA non-coding upstream 964342 6268235 ~ 6268938 (-)
G38490 NA other downstream 3103865 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3470828 1578955 ~ 1817200 (-)
G38458 NA other downstream 3510807 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 4748437 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 748471 6052364 ~ 6063817 (-)
G39487 NA other upstream 1151828 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 1334587 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 2587596 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 3808548 9112441 ~ 9152405 (-)

Expression


Co-expression Network