AMCG00012716


Basic Information

Item Value
gene id AMCG00012716
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5792038 ~ 5805393 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012716
ATGGAgaacacaatcaatcaatcaatcaataagaaACAGCTGCTGACAAGGGGTCAACCGATCTCAGTCAATCTAGAAACTCCACCCGCAACTATGATGTTGGCAAGAGAAAGACCAGGTGCGGGTAGGACCATCCCCAAGCAGATCTCAGGAAAAGGTGCAGGGTCACAGCAGAGCCATAGTAGGGCCACAGGGCAGTGTTCTTCACAAGCAAGACAGGCTGAGAAAATACCTCGGAAGGAGGCTACCGCTCTGAAGACCTGTGCAGATGAACGAGGGAGTAGTAGGAGCAACAGAGTCCCTGGACACCGGAAGGAGTCCAGCACCGCCTTGGCCCAGAACCTTAGCAGACTGGCTGTCAGTGACCAACGGTCCATTGCTTCCAGGAGATCAAGAGCAGTAAAGGCCAGTGGCATTACCCCACCTCGGGCCTCACCAACTGCACCACCCTCCAGAGCCCCCAGCAAAATTGCCCACCTGCAGGATGTGGCCAGGCTGATGCTGCACAGACCCTGCAAAAACATCATTGTGGTGGCTGGGGCTGGGATCAGCACTGCCAGTGGAATCCCAGATTTCAGGACACCAGGGACTGGGCTTTATGCAAACATGAAGAAGTACAACATCCCCTACCCAGAAGCCATCTTTGACATCGACTTCTTCACCTGTGACCCGCAGCCTTTCTACTCGCTCGCCAAAGACCTGTATCCTGGATCTTACCAGCCCAACTACATTCATTACTTTGTGAGGATGCTGCACGAGAAAGGGATGCTTCTGAGAATGTATACCCAGAATATTGATGGCTTGGAGAGGATGTGTGGCATTCCAGAAGACAAACTAGTGGAGGCTCATGGGACGTTCTCCTCTGCATCATGCCATTTGTGCTACGCAAAGTTTCCAGCCAAGGAAGccaagaaATCTATATTGAGCAACAAGATCCCTAAATGCAAAATCTGCCAAGGAACTGTAAAACCCGACGTAGTGTTTTTTGGAGAAGATCTCCCCCAGAAATTCTGTTTGTACTCCAAAGATTTTCCGAAGGCAGATCTCCTCATTGTGATGGGAACATCCCTGCAGaTTGAACCTTTTTCCAGCATTATCGATACTGTCCGGCCTAGCGTACCTCGCCTTCTGCTGAATAGAGCTCCTGTAGGGCCCTTTCAGAAGGTCCCACCAAAGAGCACAGATGTCATGGAGCTAGGGGACCTGGTGGAAAGTGTGAAGAAGCTTGCCAGGATTCTGGGCTGGGACGGTGAGATTGCTGATCTGATCAAACACCAGGAACCTGGGCTGAGCCCGAATGACCATTCATCAGTGGGCAGTAAGGAGTCTGTCAAGGTGCCACCTCCACCTGTAGCCAGAGCAAAGGTCAACCAGAAAAGCAATGGGGAGAACACAAACGGGAGGAGGGTCCTCAGGTCGTCTTCTGTCCCCGCTTGTCGAGATGGGGGGCAGGGACGGCGAGACAGCAGCAGCAATGATAGCAGCTCCTCCTCTGGCTCAGACACAGAGCACAATCTCTTCCACCCCCAGTAATTAAGCTAAACGCTGAGACGTTTCTAATGACCTATGGAACCGATGAAGCCTTTCACTGTGGAGAATATTTCAATagtgtattaaaatgttactgaatTTCCTATTTTTATACTGTTCTGTATGTGTCATGTAATTTGCTGTGTcaatttctgtatgtatatgctactagatttttaaaataagttttattgaaaacctgccattttttttccattaaaggCTGAACTTAtccttttgtcattttaatttagtgtaaCGTGTTGCCAAATCCTGTGGACATAAGGAGTATACAAGTCAACACTATATCGGTCTTGACCACATTAGAATCCTCATGtcattcaaatacaaacaaatattgtaaGCGAAGACTGACATCGGTAGAGAGCTCATCAATCATCCTATTCAATACTTTTATTACTAGAGGCAGCCAGATTTTGAAGTTATACTGACAAGTTTGTATGACTGGGACTGTCAAAGGGAAACATTGCAGTGAAAAGCATAATCATCCTTcaatccaaaaagaaaaaaagaaaaggaaaacacaggctggaatgtgaatgaaactg

Function

GO:

id name namespace
GO:0006476 protein deacetylation biological_process
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG:

id description
K11412 SIRT2, SIR2L2; NAD+-dependent protein deacetylase sirtuin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012716 True 2099 mRNA 0.47 9 5792038 5805393

Neighbor

gene id symbol gene type direction distance location
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding downstream 152506 5634465 ~ 5639532 (-)
AMCG00012713 syt10 coding downstream 355057 5424701 ~ 5436981 (-)
AMCG00012712 syt10,LOC106609485 coding downstream 377698 5412206 ~ 5414340 (-)
AMCG00012711 NA coding downstream 488145 5288028 ~ 5303893 (-)
AMCG00012710 NA coding downstream 588873 5190953 ~ 5203165 (-)
AMCG00012715 NA coding upstream 25225 5830618 ~ 5831514 (-)
AMCG00012730 NA coding upstream 184710 5990103 ~ 5997112 (-)
AMCG00012731 cry1aa,LOC108426403,LOC108279922,LOC105900698,LOC103023024,LOC107757210 coding upstream 266530 6071923 ~ 6086826 (-)
AMCG00012735 NA coding upstream 429283 6234676 ~ 6239419 (-)
AMCG00012736 NA coding upstream 451437 6256830 ~ 6257924 (-)
G39295 NA non-coding downstream 245969 5545834 ~ 5546069 (-)
G39281 NA non-coding downstream 383278 5388193 ~ 5408760 (-)
G39245 NA non-coding downstream 509352 5220771 ~ 5282686 (-)
G39246 LOC100846954 non-coding downstream 541567 5234162 ~ 5250471 (-)
G39231 med21,LOC102798687 non-coding downstream 582179 5206604 ~ 5209859 (-)
G39377 NA non-coding upstream 11079 5816472 ~ 5895114 (-)
G39443 NA non-coding upstream 462842 6268235 ~ 6268938 (-)
G39462 NA non-coding upstream 480062 6285455 ~ 6287935 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 967575 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 981063 6786456 ~ 6795733 (-)
G38490 NA other downstream 3607875 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 3974838 1578955 ~ 1817200 (-)
G38458 NA other downstream 4014817 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5252447 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 246971 6052364 ~ 6063817 (-)
G39487 NA other upstream 650328 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 833087 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 2086096 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 3307048 9112441 ~ 9152405 (-)

Expression


Co-expression Network