AMCG00012717


Basic Information

Item Value
gene id AMCG00012717
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5630403 ~ 5631119 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012717
ATGGGACAGGTAAAGTCTCAGGAGCCCGTGCAGGATTCCAAGCCGGACGTTTTGTGGGATGTCTTCTGCCAAGGCGTGGTGCATGCATCTCAGAGGCTCAAGGAATACCTCGGCTTCGAAGACCCTCAGAACAAGCTGCAGCCCAGCACCGAGACACTGAACGAGGTCTTCTTGGTCAACTTCATCTCCTACTGTGTGGAGAAAGGTGTGGAAGAACACATCACCACCAGCACCATGACCAGGCAGCAGCGCCTCCTGTTTGGCGTGGACTGGGTCTGGACCATCCTCGGACCAGACAAGAATGTGAAGATCCAGTTCCCGGTACAGACTGCTCAGATGTCCGATCAGGCTGTGAGGAGAGAGATGCAGGATCTGGAGAAGACATGTGAGGATGTGGGGGAGCTTGCCAGGGCTGATTCTCAGTTTAGAAAAAAGAGCAACTATGAGAAACTGGATGAGTTTTGCTCCCTGGTGGGAAAGGACTGCGTGGGCATGTTCATTGTGTTCGGAGTGCCGGGGAAGACTAGGGAGATCAGAGGGGCGCTGCTGGAGAGTGTGAAAAGCAGGAAGGGTAAGAATGGTCTCAGAGGAGACCTCAAGGTGAAGGATTTCTTTCAGACGACTGACACTTTCGTCTCCACCAGGGAGATGCTGGAATGCTGCTCTAAGAACAATGGTGTTAGGGATCTGAGCAACTCTTACATCAATTTTCTCTAG

Function

GO: NA

KEGG:

id description
K20243 REP15; Rab15 effector protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012717 True 717 mRNA 0.52 1 5630403 5631119

Neighbor

gene id symbol gene type direction distance location
AMCG00012723 NA coding upstream 861 5603313 ~ 5629542 (+)
AMCG00012733 NA coding upstream 122402 5507669 ~ 5508001 (+)
AMCG00012719 si:ch211-245j22.3,LOC105895582,LOC104937698,LOC106573300,LOC107749310 coding upstream 317885 5305061 ~ 5312518 (+)
AMCG00012727 NA coding upstream 352289 5264273 ~ 5278114 (+)
AMCG00012724 stk38l coding upstream 387200 5235166 ~ 5243203 (+)
AMCG00012722 NA coding downstream 8882 5640001 ~ 5646627 (+)
AMCG00012725 polr3b coding downstream 64012 5695131 ~ 5724754 (+)
AMCG00012721 rfx4,LOC106561413,LOC106573296 coding downstream 100871 5731990 ~ 5763147 (+)
AMCG00012720 NA coding downstream 136087 5767206 ~ 5791485 (+)
AMCG00012729 NA coding downstream 401634 6032753 ~ 6039590 (+)
G39279 NA non-coding upstream 193241 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 556277 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 674536 4949240 ~ 4955867 (+)
G38964 NA non-coding upstream 1112772 4517136 ~ 4517631 (+)
G38886 NA non-coding upstream 1653786 3974365 ~ 3976617 (+)
G39321 LOC100846954 non-coding downstream 16655 5647774 ~ 5648107 (+)
G39382 NA non-coding downstream 291495 5922614 ~ 5923023 (+)
G39445 NA non-coding downstream 653815 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 881529 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 1130846 6761965 ~ 6762278 (+)
G39297 NA other upstream 77636 5552417 ~ 5552767 (+)
G38954 NA other upstream 1256829 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1378809 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 4049015 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 4791137 778908 ~ 839266 (+)
AMCG00012718 NA other downstream 176727 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 422029 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 845130 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1713331 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 2094369 7725488 ~ 7727828 (+)

Expression


Co-expression Network