AMCG00012719 (si:ch211-245j22.3,LOC105895582,LOC104937698,LOC106573300,LOC107749310)


Basic Information

Item Value
gene id AMCG00012719
gene name si:ch211-245j22.3,LOC105895582,LOC104937698,LOC106573300,LOC107749310
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5305061 ~ 5312518 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012719
CTAATCTAGAAGCTGATATATAAAGTGAGATTCAATAGGTCTCTCCTGCAGAGAGTTCAGGTGTGTGAAAGATGGGTCAGGCAGCATCTTTACCTTGTAGGAACGGAGGCACCTATGTCATGGAGCTTTGGTATAGAAAATTTATCAACGAGTGCCCTAGTGGATTAATCACGCTACATGAATTCCGGAGACACTTCTGCAATGGAACAGTGGGTGACGAGTCGTCAGAATATGCCGAGCAGATATTCCGGACTCTGGACAATAACGGGGACGGGATTGTGGATTTTCGAGAGTATGTCACTGCTATAAGTATGCTGATAGAGGGCTCCCctgaagaaaaactgaaatggtCTTTCAAACTGTATGACAAAGACAAGGATGGAGCCATCACACGATCAGAAATGCTCGAAATCATGAAAGCTGTATATAAGATGAGTTTGGCTGCCTCTCTAACTAAAGTGAATCCATTGACAGCTGAAGAGTGCACCAGCAGGATATTCCTAAGACTGGATCGAGACAAAAATGctgTCATCAGCCTTGAAGAGTTCATTGAGGGTGCATTGGATGACAAGTGGATACGAGAAATGCTGGAATGCGACCCCAACACAGTCAAGGTGGAAAGACCTCTGTGAAACCAGTCTCCTGCCTAGCGAGCTCTTGGCCTCTCGGTTGAATTGGTTGGAGGCCTACTTACCTTTCAAACAGCAGGGAGACATACAGCTCCTTGGCAACAGGCTTTTTTAAGTCAATACAATGTGGTTAGCACATTTTCAAAGGGTGCTGCAAATTAAGAGCTGATCAAATGTTATTAGTCTTcggtggagggggagagggagaaaggcaCCTTGTTTAGTGTAGACATGTTGCCActtacatttccttttatgtCCTAGCATGTCGAGCTGTTCCTACTTTGCCTGGTTCCGAGTTACCTTGACAttcatttaagcatttaaagCCAGCACACTATTTATATAAGCGGTTCAACTATGTAACTTATTACAATCGGTCTCTTGTCTCCTCCTGCTGAGGTTTGTATTTTAACGCAGTTGCACACCAGTAAATTGAAACATCCAATCTCAGCACCCACTGACTGTTCTTTGTGTTATTGCAGAAAGCACTTGATCTTTGGAGGGTTGGTAttgctatttttttgtttttggttgtttgttttgtcttttcttttcttttttttgctgttcttgttgttttgtttgagtgCAACTACATATAAATCAGTGGAGTACCAGTCAAAGGTTTACACCAGTTAGTTTCGTGAGGTTGAATCAGTGTTGAATAAACTATATACTTGACAAATAACTTTAGTTTAAATGAAATATGTGAAtactttgtgtatatatgtaactTGCCTTTTTGTAACATATTGCTGCTGCCTTTATGAATGAGGTTCTTATTAGTAGGAAGACAAAGAAATCTAGATACAAAGAAATCCTAGGGTTTGATTTATGATTCTAAAAATATCAACAGTAATCAATCAGCC

Function

symbol description
si:ch211-245j22.3 Predicted to enable calcium ion binding activity.

NR:

description
uncharacterized protein LOC563798

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012719 True 1501 mRNA 0.41 5 5305061 5312518

Neighbor

gene id symbol gene type direction distance location
AMCG00012727 NA coding upstream 26947 5264273 ~ 5278114 (+)
AMCG00012724 stk38l coding upstream 61858 5235166 ~ 5243203 (+)
AMCG00012726 fgfr1op2 coding upstream 115741 5182302 ~ 5189320 (+)
AMCG00012728 NA coding upstream 236298 5045519 ~ 5068763 (+)
AMCG00012702 NA coding upstream 401478 4895052 ~ 4903583 (+)
AMCG00012733 NA coding downstream 195151 5507669 ~ 5508001 (+)
AMCG00012723 NA coding downstream 290795 5603313 ~ 5629542 (+)
AMCG00012717 NA coding downstream 317885 5630403 ~ 5631119 (+)
AMCG00012722 NA coding downstream 327483 5640001 ~ 5646627 (+)
AMCG00012725 polr3b coding downstream 382613 5695131 ~ 5724754 (+)
G39193 NA non-coding upstream 230935 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 349194 4949240 ~ 4955867 (+)
G38964 NA non-coding upstream 787430 4517136 ~ 4517631 (+)
G38886 NA non-coding upstream 1328444 3974365 ~ 3976617 (+)
G38882 NA non-coding upstream 1342488 3962363 ~ 3962573 (+)
G39279 NA non-coding downstream 124315 5436833 ~ 5437162 (+)
G39321 LOC100846954 non-coding downstream 335256 5647774 ~ 5648107 (+)
G39382 NA non-coding downstream 610096 5922614 ~ 5923023 (+)
G39445 NA non-coding downstream 972416 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 1200130 6512648 ~ 6536393 (+)
G38954 NA other upstream 931487 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1053467 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 3723673 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 4465795 778908 ~ 839266 (+)
G39297 NA other downstream 239899 5552417 ~ 5552767 (+)
AMCG00012718 NA other downstream 495328 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 740630 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 1163731 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 2031932 7344450 ~ 7381559 (+)

Expression


Co-expression Network