AMCG00012723


Basic Information

Item Value
gene id AMCG00012723
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5603313 ~ 5629542 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012723
CCTAATCGAAACATGGTGACCACACAATTTAGTTTCTAAAGATGTTTACAGGGTGTTGGGTTCAGCACTTggaatgcttttgttttaaggaggttttgtttgtatttttatctcCAGGATTGGCAGTGGCCTGCTTTGAGTTTTCAAGATGATGTCCGATGCCAGTGACATGTTGGCCGCAGCTTTGGAGCAGATGGATGGAATCATAGCAGGCTCCAAGGCTTTAGAATACTCCAATGGCATCTTTGACTGCCAGTCTCCTACCTCTCCCTTTATGGGCAGCCTCCGAGCACTACACCTGGTCGAAGACTTGCGTGGTTTGCTGGAACTAATGGAAACGGAGGAGAAGGAAGGGTTACGCTGTCAGATCCCAGACTCCACGGCGGAAACTATTTTAgaatggctccagggtcacctGACCAATGGACACATTTCTGTGAGTGGTGATGTTTACCAAGAAAGACTCTCTCGCCTTGAGAGTGACAAGGAATCTCTTGTGTTACAAGTCAGTGTGTTAACCGATCAGGTGGAAGCTCAGGGGGAGAAGATCAGAGACCTTGACTTGTGCCTGGATGAACACCGGGAGAAGCTGAATGCTACTGAGGAGATGCTGCAACAGGAACTTTTGAGTAGGACAGCCCTTGAGACGCAGAAACTGGATCTGATGGCTGAGGTTTCCAACTTAAAACTGAAGCTGACTGCTATGGAGAAAGACCGTCTGGATTTCGATGAGAGATTCAGGGACAGCGAGTCACTGCATAACTTAATCTCCGACCTCCGAGACCAGATGGAAACCTTGGAGGTGGAATTAGCTCTGTTCCAGGAAAAGAGAGTACAGTATGGGGACCAAGAGgGCCTGATCCAGGAGATCAGTGAACTGAGGTTCAGAGTCACAGAGATGGAAAATGAAAGACTTCAGTATGAAAGGAAACTGAAATCGACAAAATCTCTAATGGCCAAACTGTCTAGCCTGAAAATCAAGGTGGGTCAGATGCAGtatgaaaaacagaagatgGAACACAAAATCCAGACACTAAAGGATGAGCTAGGGATGCTGAAGGAGCAGCTGGAAAATAAAGAAGTGGAGTTGAGGAGGTTGCGTGATGCGACGGGCTTCAGTGTTACCCCTGGGGAGAGGTcggagaaggaggagaaagATTTCGAggtgcagaaaatgaaaagggCAGTTGAGTCTTTAATGGctgcaaatgaagaaaaaGACCGTAAGATCGAGGAACTCAGGCAGTCCCTGAACCGCTATAAGAAGGTTCAGGACATGGTTATGTCAGCCCAAGTTAAGAAAGACAAACTAAAGGATGGTGACAGTGATGAGAGCCAGAGTGACAGTTCCATGTCAGTGTCCACTGCCATTTCAGTGGTTCTCGAATCGGAAAAATCACCCTCACCTGTCGCAGACAACGAAGAGACACCGGGAATGAGGCAGGATGAGctACCAAAATTACACACAAGCAGTCTCCAGGTGTGCATCCCATCTTCCTCATCAACCCCCAAGTCTTCCTGTGTTCAAGAGCACAATGTGAATCTGGAGTTCACTGAACTGGACAGCAAAGCGTTGCCTCCAGAGTTATCAGAAATGCAAGAAACCCCTATATGTGACAGCCCTGTAACTCCAAATGTCACGAAAGCAAGTAGTCTGGAAAATCTGAAGAGCAGTGAAACAGACAAGCAGACTGTCATTTCACCCATCCATCAGAAGCCAGCAGAGATGGCGGAGAACTTTTTCATTCTCCTTAAGaACAAAGCCTATGAGGAGATCAGCAAGTTTGGCAGTCTTCCTCCCAAGTCTCCCAATTGCTCTGGCTCAGCGGACGATGAGAGTTTTGGAACGAGGAAGGCCAGGTCTTCATTCGGGCGAGGATTTTTCAAgatcaaaggaaacaaaagaacTGCAAGTGCTCCTAATCTAGCcgagactgagagagagggcaCAGACCACCTGGACCTGGCAGGTGTGCCGCGCAGGTCTGCGGAGACTGACAGCGTCCACACGTCCCCCGACTCCAAGAAGAAGGCCAGAGGCATCAAGAAGTTATTTGGGaggcTTAAGAGAAGTCAGTCAACCACTTTCAACCCCGATGAGATGTCGGAGGGAGAATTCAAAAGAGGCGGAGTGAGGGCCACAGCAGGGCCCAGACTGGGCTGGTCTAGAGACTTGCAGAACACTAGCAATGAACTCGACACACCCTTCGCCAAGTGGACGAAGGACCAGGTGTGCAGCTGGCTGCAGGAGCAGGGGCTGGGTCTGCACGTCAACTCAGCCAAGCACTGGATCATGTCTGGCCAGACTTTACTGCAGGCGTCTCAGCAGGATCTGGAGAGGGAGCTTGGGATTAAACACCCTCTGCACAGAAAGAAACTGCAGCTGGCTTTGCAGGCTCTAGGATCTGAGGAAGATGACAACAAAGGAAAGCTGGATTACAACTGGGTCACAAGGTGGCTGGACGATATTGGGTTACCCCAGTACAAGACTCAGTTTGACGAAGGCAGGGATGATTTGTTGTCCCTGAAAGTAGGAAGTGTCCTTCATCATCTGAGTATTAAAAGAGCCATTCAGGTCCTGCGGATTAACAACTACGAACCCAACTGTTTGCGTAGGCGGCCTTCAGACGAGAACAACATCACTCCTGCGGAGATTTCACAGTGGACCAATCACAGAGTGATGGAATGGCTGCGGTCTGTGGATCTGGCCGAGTACGCCCCCAATCTGAGAGGGAGTGGTGTCCATGGGGGACTCATGGTTTTGGAGCCGCGCTTCAACGTGGAGACGATGGCTCTGCTGCTGAACATCCCTCCGAACAAGACCCTCCTGAGGAGACACCTGGCCACACACTTCAACCTGCTCATAGGCTTGGAGGCCCAGCAGCAGAAACAAGAGTCGGTGGAGTCACCTGACTACAACCTGCTCACGGCCACAGCCAAAGTCAAGCCTAGAAAACTGCCTTTCGGGAGCTTTGGAAGTCTGCGGAAGAAGAGACAGGAGGAGAACGAGGAGTATGTGTGCCCCATGGATGTGGCAATGCCCAAGGGAAGCAGTTTTCAGAAGAACTACAAGCGCGGAGTGGATATCCGGTTGTACGATGAAGACCTTGACCGTCTGGAACAGatgGAGGACTCTGAGGGAACTGTACGGCAAATTGGAGCATTTTCAGAGGGCATCAACAACTTGACTAGCATGCTGAAAGAAGACGAATTCTTCAAAGAACTTTCGACTTGTTCCCCCAGCGCCAGTGTTACAGACGAGGACTCgaatgtgtgacagtgtgtgatgTCATGAGAACAGATGGCTGTGAATTAAACTGTGCCAATCATAACTGCTAATGAGAATGGTGCCACCTGTATATtatgtaaagagaaaaaaatgccaTGGGTGGTCTTTGATatgacatgcattttaaatgaaataatttaatactCTATCACTGCATATTTAATCGCACTATACattcacttttaaaaaataaccgCAAAAAAGAGAAATTGCCAAATCTCCAGAGATCTTAAGGAGGGAAAAGTGTGTTAAATGGTAAAGATCAGTTCTCAGCACTACCTTAACTGTACTTCAGCAGCCTGAAGATCCATATCTACTAATGGAAACAGTTTGATATTTCAAGATcagtaacattttgtttttaattgtagaaAGATCCTAGCTTGCCTACCAGCTGGTTACTGGAAAATATGGACTTTTATACTGTCTgggattatttgtttatttatgtaatcacGTGAAGTaatactgtgttttttgtttttttaaataacaaaatacttgtcACTGCACAGTTTTATGTGATGGTAAGCCAAAACCACAGCATGgcatgttcttttttaattgcaaaaaaacaaacattagtgCTTCAGTTACATTAATATCCACTTCCTAGTGTACAAAATCACAAACTTAATTTTTTCCACCGAAAAAGGGACAATTAGTTAATTGTGTGATTAACTAGTCATTGACATCTAGCCAACTCTGCTGTAAacctattaaattaaataaccagCAACAGCCATAGTTATATATTCAAAGTGAATTTAATTGTTGGCCCTTTTGGTGTATCCCTGTTTAACAAACCACACTGCCAAGCCTATCATATCCACCATAAAAAGACCGAACTGACGCCAAAGCACAATAGTTACAGTACCAATTTAAGCTACAATTGTTTGGAATATCTTTAAGGGAAAAGTTGTGTGTAAACAACGGTCTTAAGTGgcatgtatttgaaataaattggtGAGGGTTTTCAGATCATTTAATCAGCCAGCCATGACCTGAAACTCTGCAAATACATATCCGTACCTCTTAAGTGTCttatgtttgcatgtatttatatcaGAAGACTGTTTCAGCACAAATACATAgccattttttttccttgtacgtttagtgtttttttgtatgttatttatgcttttgtctttttttgccACGGCTTTTGTGTAGATAAATGCTTAGAAAGACGGAACTTCTCATGAAATAAgtcccatttatttattgttaccTTTCTAATTTTCCTAGACTGGGGAGGAAAATTGTAATAAACACTGGCTTCggtttgtttcattatttgatAAGTGGTCAGCAGAGCCCTACATGTTACCCTTCACAAGTGCTGTAAGATGCATTCAAATGATGCTGCATTGTTTCCAGAGGTCTGTTTTACTCTACTTTTAATCAGTGTTAGTTGCAACCAAtgaaacataaatgtattaattttcttaAACCTGTATAATAGATACTTCAGtatgtatattacatttcttgttgAACTTTCTACAGATGTTCTGTCtttctgcatgtttttaaacaaagttaaaGCAATACAAGTATGCTATGAAGCAGTGATATTGTTATGCAACCCTGGCTATCCAAGATATTATTAGTCAAATTTGTATGTGTACTTTCCATGTTTTTATCCATTTTAATAagtcaataaacacatttcaattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012723 True 4973 mRNA 0.44 29 5603313 5629542

Neighbor

gene id symbol gene type direction distance location
AMCG00012733 NA coding upstream 95312 5507669 ~ 5508001 (+)
AMCG00012719 si:ch211-245j22.3,LOC105895582,LOC104937698,LOC106573300,LOC107749310 coding upstream 290795 5305061 ~ 5312518 (+)
AMCG00012727 NA coding upstream 325199 5264273 ~ 5278114 (+)
AMCG00012724 stk38l coding upstream 360110 5235166 ~ 5243203 (+)
AMCG00012726 fgfr1op2 coding upstream 413993 5182302 ~ 5189320 (+)
AMCG00012717 NA coding downstream 861 5630403 ~ 5631119 (+)
AMCG00012722 NA coding downstream 10459 5640001 ~ 5646627 (+)
AMCG00012725 polr3b coding downstream 65589 5695131 ~ 5724754 (+)
AMCG00012721 rfx4,LOC106561413,LOC106573296 coding downstream 102448 5731990 ~ 5763147 (+)
AMCG00012720 NA coding downstream 137664 5767206 ~ 5791485 (+)
G39279 NA non-coding upstream 166151 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 529187 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 647446 4949240 ~ 4955867 (+)
G38964 NA non-coding upstream 1085682 4517136 ~ 4517631 (+)
G38886 NA non-coding upstream 1626696 3974365 ~ 3976617 (+)
G39321 LOC100846954 non-coding downstream 18232 5647774 ~ 5648107 (+)
G39382 NA non-coding downstream 293072 5922614 ~ 5923023 (+)
G39445 NA non-coding downstream 655392 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 883106 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 1132423 6761965 ~ 6762278 (+)
G39297 NA other upstream 50546 5552417 ~ 5552767 (+)
G38954 NA other upstream 1229739 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1351719 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 4021925 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 4764047 778908 ~ 839266 (+)
AMCG00012718 NA other downstream 178304 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 423606 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 846707 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1714908 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 2095946 7725488 ~ 7727828 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G181062 NA non-coding NC_047605.1 CM018551.1 13718323 ~ 13719757 (-)
mexican tetra (Astyanax mexicanus) G158093 ppfibp1 non-coding NC_035914.1 CM008317.1 14168959 ~ 14190042 (+)