AMCG00012725 (polr3b)


Basic Information

Item Value
gene id AMCG00012725
gene name polr3b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5695131 ~ 5724754 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012725
AAATAATATGGATATTTTGGCCGAGGAGTTTGGGGATTTGGGCCCCCAGCAGCTCGCTGCTCCTGTGAATACAGTAGAGGAAAAATGGAAGCTGCTGCCAGCCTTTCTGAAGgtgAAAGGGCTGGTTAAACAGCACATTGACTcgttcaattattttattaatgtagaGATCAAGAAAATCATGAAAGCGAATGAAAAGATTACCAGTGATGCTGATCCAATGTGGTATTTGAAGTACCTCAATATTTACGTTGGAATGCCTGACGTCGAAGAAAGCTTCAATGTAACCAGACCTGTGTCTCCTCATGAGTGCCGCCTTAGGGATATGACCTACTCTGCCCCCATTACTGTGGACATTGAATATACCCGTGGAAGTCAGAGGATCATCCGAAATGCTCTGCCCATTGGAAGAATGCCCATCATGCTGCGCAGCTCCAACTGTGTCCTGACCGGAAAGTCTCCTGCCGAGTTCTCCAAACTGAACGAGTGTCCGCTTGACCCAGGTGGTTACTTCATCGTGAAGGGTCAAGAAAAGGTCATCCTGATACAGGAGCAGCTGTCCAAAAACCGAATTATAGTGGAGGCAGACAGGAAAGGGGCTGTGGGGGCCTCTGTAACCAGTTCCACACATGAGAAGAAAAGCAGAACCAACATGGCAGTGAAACAAGGACGGTTTTACCTGAGACACAACACTCTTTCTGAGGACGCACCCATTGCCATTATCTTCAAGGCCATGGGGGTGGAGAGTGACCAGGAGATTGTCCAGATGATTGGCACAGAGGAGCACGTCATGGCAGCCTTTGCCCCCAGCCTGGAGGAGTGTCAAAAAGCACAGATCTTCACACAGACGCAGGCACTGAAATACATCGGCAATAAAGTCCGCCGGCAGCGAATGTGGGGAGGACCCAAGAAAACCAAGATGGAAGAAGCCAGAGAGTTGTTGGCCTCCACCATTCTGACCCACGTGCCTGTGAAAGAGTTTAACTTCCGGGCAAAGTGCATTTACCTGGCTGTGATGGTCCGCAGGGTGATTTTGGCTCAAGGGGAAAACAAGGTGGATGACCGGGACTACTATGGCAACAAGCGTCTGGAATTAGCTGGGCAGCTGCTGTCCCTCTTGTTTGAAGACCTGTTCAAAAAGTTCAACTCTGAGCTAAAGAAGATTTCTGACCAGATCATCCCTAAGCAGAGAGCGGCGCAGTTCGACGTGGTGAAACACATGAGGCAGGACCAGATCACAAACGGAATGGTCAACGCCATATCTACAGGTAACTGGTCACTGAAGAGGTTTAAGATGGACCGCCAGGGAGTGACCCAGGTGCTGTCTCGACTCTCCTACATCTCGGCCCTGGGCATGATGACCAGAATCTCTTCACAGTTTGAGAAGACAAGGAAAGCCTGCGGTCTGGTAAAAAACCTGGCTTTGATGACCCATATCACCACAGACATGGAAGATGGCCCGATTGTCAAATTGGCCTTTAACCTAGGAGTGGAAGATGTCAATCTCCTGTGTGGCGAAGAGCTGTCTTACCCTAACGTTTTCCTTGTGTTCCTGAATGGTAACATCCTCGGGGTCATCAGAGATCACCCAAACCTTGTGAATACCTTCCGTCTGATGAGGCGAGCCGGGTTCATTAATGAGTTTGTGTCCATATCCACCAACCTGACTGACCGCTGTGTGTACATCTCCTCTGATGGAGGGAGGCTGTGCAGgccatacattattgtaaagaaaggaaaacctgctgtaaaaaacaaacacattgaagAGCTATCCCAAGGATACAGGAACTTTGAAGACTTTCTTCACGAAAGTTTGGTAGAATATCTTGATGTCAACGAGGAGAATGATTGCAACATTGCACTTTATGAACATATGATTACCAAagaTACCACACACTTGGAAATCGAGCCATTCACATTGTTGGGCGTGTGTGCGGGCCTGATTCCATACCCTCATCACAATCAGTCCCCCAGAAACACATACCAGTGTGCTATGGGCAAGCAAGCTATGGGAACCATTGGATACAATCAGAGGAACAGGATCGATACACTGATGTACCTGCTAGCCTATCCACAGAAGCCCATGGTGAAGACCAAAACTATTGAGCTGATTGACTTTGAGAAACTGCCAGCAGGCCAGAACGCCACGGTGGCCGTGATGAGCTACAGTGGCTATGACATTGAGGATGCCCTGGTGTTAAATAAAGCCTCTTTGGACAGAGGTTTTGGAAGATGCCTTGTGTACAAGAATGCAAAATGCACTCTGAAGCGATACACTAACCAGACCTTTGATAAAGTCATGGGTCCGATGCTGGATGCAGCTACAAGAAAACCCATTTGGAGGCATGAGATACTAGATGCAGATGGCATTTGCTCTCCCGGTGAGAAGGTGGAGAACAAGCAGGTGCTGGTGAATAAGTCCATGCCCACTGTCACCCAGACTCCACTGGAGGGCAGTGCCCATCCCCAGCAGCCCCAGTACAGGGATGTGCCAATCACTTACAAAGGCTCAACCAACTCCTATATTGAGAAAGTGATGATTTCCTCCAATGCGGACGATGCCTTTTTGATCAAAATTCTGCTGCGACAAACCAGGAGGCCTGAGATCGGTGATAAATTCAGCAGTCGTCATGGCCAGAAAGgtgtgtgtgggCTCATTGTTCCTCAGGAGGACATGCCTTTCTGTGACTCTGGAATCTGCCCTGACATCATCATGAATCCGCACGGTTACCCTTCCCGTATGACGGTCGGGAAACTGATTGAGCTCCTGGCAGGCAAGGCAGGGGTTTTGGATGGCCGCTTTCATTATGGTACGGCCTTTGGAGGCAGCAAAGTAAAAGATGTCTGTGAAGACCTTATCCACTACGGCTATAACTATTTGGGAAAAGATTATGTGACATCTGGCATCACAGGAGAACCACTGGAAGCCTATATTTACTTTGGTCCAGTTTACTACCAGAAGCTGAAGCACATGGTTCTCGACAAGATGCATGCCAGGGCCCGAGGCCCAAGAGCTGTTCTGACCCGCCAGCCCACAGAAGGTCGATCCAGAGACGGTGGCCTGCGTCTGGGTGAGATGGAGCGGGACTGCCTGATTGGCTATGGAGCCAGCATGCTCCTGCTGGAACGGCTGATGATATCCAGCGATGCCTTTGAGGTGGATGTGTGTGGGCAGTGCGGGCTGTTGGGATACTCCGGCTGGTGCCATTATTGTAAGTCTTCTTGCCATGTGTCCTCCCTACGAATCCCTTATGCCTGTAAGCTGCTCTTCCAGGAACTCCAGTCTATGAACATTGTGCCCAGGTTAAAACTGTCACGATACAACGAGTGAAGAACTCATACCTTGATCCTTGCAGTGCTGCATCAGATATTCAACAGGAGGGATGGATTGGTGCATAAGATATGTATAGTGTTTTGGAAACTTGAAGCGCACAGTCCATCTTTGACATTGACTCTCAACACTtgtactatttttgttttgaaaagcagtTAAGTTAACCTGAAAGCTAGATGATAACTTTTTGgaacaaagttttgatttttgtgTAAGTTCAACTACGTTAATTTAGCTAATCGCAGTTCAAATATTTTTGAACTGGTATTTAGTGTATTTGGTCTTCGCTTAACTAAGGTTGCTTTTGTTGCTCACATATATGAGTGGACTATGGTGAATAAAAGGAGACTGAATACTTGACATTGATgtcaaggaaataaaatatatttcttacatGCTGGAGagtactgtacatacagtaaagctgtatattgttttatatgaaaaacTGGACACCTAAAACCAtggcaaaataatgttttccttttcatttttgtaaagaGTTGGAGAATGTTTCATTTTGGAAGGAATAAATTATGAAAGTATAACTGTTGCTATCAGTGTTCATACTAATGTCATGAGGGGTAAGACTCCTTTCTTCTTCGGGAATGTTATTggagaggattttttttttttttt

Function

symbol description
polr3b Predicted to enable several functions, including DNA binding activity; metal ion binding activity; and ribonucleoside binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Acts upstream of or within digestive tract development; exocrine pancreas development; and tRNA transcription. Predicted to be part of RNA polymerase III complex. Is expressed in intestine; liver; nervous system; and retina. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 8 with or without oligodontia and-or hypogonadotropic hypogonadism. Orthologous to human POLR3B (RNA polymerase III subunit B).

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC2

GO: NA

KEGG:

id description
K03021 RPC2, POLR3B; DNA-directed RNA polymerase III subunit RPC2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012725 True 3976 mRNA 0.47 28 5695131 5724754

Neighbor

gene id symbol gene type direction distance location
AMCG00012722 NA coding upstream 48504 5640001 ~ 5646627 (+)
AMCG00012717 NA coding upstream 64012 5630403 ~ 5631119 (+)
AMCG00012723 NA coding upstream 65589 5603313 ~ 5629542 (+)
AMCG00012733 NA coding upstream 187130 5507669 ~ 5508001 (+)
AMCG00012719 si:ch211-245j22.3,LOC105895582,LOC104937698,LOC106573300,LOC107749310 coding upstream 382613 5305061 ~ 5312518 (+)
AMCG00012721 rfx4,LOC106561413,LOC106573296 coding downstream 7236 5731990 ~ 5763147 (+)
AMCG00012720 NA coding downstream 42452 5767206 ~ 5791485 (+)
AMCG00012729 NA coding downstream 307999 6032753 ~ 6039590 (+)
AMCG00012737 btbd11a,btbd11,LOC107757250,LOC107694300,LOC107592010 coding downstream 375827 6100581 ~ 6101610 (+)
AMCG00012741 btbd11,btbd11a,LOC106573291,LOC100703440 coding downstream 468506 6193260 ~ 6231290 (+)
G39321 LOC100846954 non-coding upstream 47024 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 257969 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 621005 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 739264 4949240 ~ 4955867 (+)
G38964 NA non-coding upstream 1177500 4517136 ~ 4517631 (+)
G39382 NA non-coding downstream 197860 5922614 ~ 5923023 (+)
G39445 NA non-coding downstream 560180 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 787894 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 1037211 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 1173243 6897997 ~ 6898230 (+)
G39297 NA other upstream 142364 5552417 ~ 5552767 (+)
G38954 NA other upstream 1321557 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1443537 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 4113743 1394839 ~ 1581388 (+)
AMCG00012639 LOC105896728,LOC103361979,LOC104943185,LOC102310764,LOC102198406,LOC100699467,LOC101465237 other upstream 4855865 778908 ~ 839266 (+)
AMCG00012718 NA other downstream 83092 5807846 ~ 5823515 (+)
AMCG00012734 NA other downstream 328394 6053148 ~ 6056832 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 751495 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1619696 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 2000734 7725488 ~ 7727828 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013314 polr3b coding NC_007129.7 CM002902.2 15382029 ~ 15420168 (-)
grasscarp (Ctenopharyngodon idella) CI01000013_06765502_06790599 POLR3B coding CI01000013 null 6765502 ~ 6790923 (+)