AMCG00012730


Basic Information

Item Value
gene id AMCG00012730
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 5990103 ~ 5997112 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012730
AGTGAAGAATGTAGGCTGCCAGGGGGCTCCAATGTGGCTGAGAGGATGGAGTGCTCCTGGAAGacagtgctgctgctggtgtGCGCCTCACTGGGGATCCAGTACACTGCCATTCGCTCTCTCAGAGATTCTTTCAGCTCCCCCTGCCAAGGCAGTCATCACTGCCAGCACAGAGAACTAAAAGAGTACACGTGGAGATCCCTCTGCGATGATGGATTGTCATTTGGTCCCTTCAACTCTCAGAACAGGAAACACATAATTCTTTTTGCTACCACTAGAAGTGGCTCATCCTTCACTGGACAGCTGTTTAACCAACATCCTGACATATTTTATCTCTTCGAACCCCTCTACCATGTCCAGCAGGCATTCACCAACTCCAGCACGAGGCTTCGGAAAATACTGGACCGCAGAGCCCTGCTTGGGGCATACAGGGACCTCTTGCAGAACCTGTACAATTGTGACTTCTATTTCTTGGAGAATTACATCAAACCGGAGCCCAAGGACCATGTCACCAGCTCCTTCTTCCGGAGGGGATCCAACAGTGCCTTATGCTCTCCCCCGGACAGAGGCTACATGGCCATCAAAACCGTTCGCATCCCTGAGATCAAAGACCTGAGGATATTGTCAGAAGATCCTAGACTAAACCTGAAGATCGTACACTTGGTGAGGGACCCTCGCGGGATTCTAGCATCAAGGATGGTCGCTTTCATGGATCAGTTCCGAGCCTGGAAAATATGGAACGCCACTGGCAGAAGGCCCCACTATGTGGATCTCGCCCAGATTACCCGGACTTGCCAGGATCTGTCTGACTCGGCCGAAACGGGCTTTCAAAAACCGTCGTGGCTGAAAGGGAAGTACTTGCTAGTTAGGTATGAGGACTTAGCTAGGAACCCAGAGGACAAGGCCAAAGACATTTACAAGTTTATTGGCCTTGAAATGGATGAAAAGGTCCGCACATGGATAATACACAACACCAACAGAAGCGCGGCTCAAGAAGGGAATTACAAATTTTCAACAACCAGAAACTCTAAAGCCACTGCTGAAAGCTGGAGATTAAACCTAGCTTTTGACATTGTCCAGACAGTCCAAAGTctttgtaataatacattatcttTACTAGGGTACAAGATTGTGAATTCTGTGACTGAGCTGAGGAAT

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012730 True 1158 mRNA 0.49 3 5990103 5997112

Neighbor

gene id symbol gene type direction distance location
AMCG00012715 NA coding downstream 158589 5830618 ~ 5831514 (-)
AMCG00012716 NA coding downstream 184710 5792038 ~ 5805393 (-)
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding downstream 350571 5634465 ~ 5639532 (-)
AMCG00012713 syt10 coding downstream 553122 5424701 ~ 5436981 (-)
AMCG00012712 syt10,LOC106609485 coding downstream 575763 5412206 ~ 5414340 (-)
AMCG00012731 cry1aa,LOC108426403,LOC108279922,LOC105900698,LOC103023024,LOC107757210 coding upstream 74811 6071923 ~ 6086826 (-)
AMCG00012735 NA coding upstream 237564 6234676 ~ 6239419 (-)
AMCG00012736 NA coding upstream 259718 6256830 ~ 6257924 (-)
AMCG00012742 NA coding upstream 292519 6289631 ~ 6327075 (-)
AMCG00012743 NA coding upstream 365337 6362449 ~ 6378254 (-)
G39377 NA non-coding downstream 94989 5816472 ~ 5895114 (-)
G39371 NA non-coding downstream 178067 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 444034 5545834 ~ 5546069 (-)
G39281 NA non-coding downstream 581343 5388193 ~ 5408760 (-)
G39245 NA non-coding downstream 707417 5220771 ~ 5282686 (-)
G39443 NA non-coding upstream 271123 6268235 ~ 6268938 (-)
G39462 NA non-coding upstream 288343 6285455 ~ 6287935 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 775856 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 789344 6786456 ~ 6795733 (-)
G39561 NA non-coding upstream 900875 6897987 ~ 6898237 (-)
G38490 NA other downstream 3805940 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 4172903 1578955 ~ 1817200 (-)
G38458 NA other downstream 4212882 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5450512 514222 ~ 539591 (-)
AMCG00012732 NA other upstream 55252 6052364 ~ 6063817 (-)
G39487 NA other upstream 458609 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 641368 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 1894377 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 3115329 9112441 ~ 9152405 (-)

Expression


Co-expression Network