AMCG00012732


Basic Information

Item Value
gene id AMCG00012732
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6052364 ~ 6063817 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012732
ctcagcTCGGTGCCAAAACACGCTGACTATGTCTGTCAAGACTTCCCGAGTGCAGTAGAGCTAGCATCGACCTTTCCACTGTGCAACCAAGTTGAAACCATATGGATCATAGGTGGGGTTGAGGTGTATAAGGAGTCTGCAAGGCATCCCTGGTGTGATCTCATCTACCTCACTCATGTCATGGCTGACTTTGACTGTGACACCTACTTCCCAGAGTTTGATCGGGAAGtgtatgaacagctggaaaCGATTAACCTTGTTACAagTGTGTTTTCAATGCTGTGGGGAGCGCTGCCCTGTCTGCCCCCTCTTCCTGCCCCGCTGGAGAACGCCCCACCCCCCTGCAGTAGCCAGAAGCAGCCCCCAGGATGGCAGCCCCCACCTCAGTAA
>TU49135
GTCAAATATGTGCATCAGGATGGGGTGAAACCTACTAGTGCTACTGGCTGTTCCATCTAATTGAACCAAGGTTGTCGAACATCCATAGAGTTCACTCCCCAGGGAAGCTAAGATAGCAAATGCCTTGATGGAATGGCTCTCTGTGACATTACGTTTTTGACAGATGTTCATGATAATAAAAATTTGGAAgttgcacttgttttttttcttctctcagcTCGGTGCCAAAACACGCTGACTATGTCTGTCAAGACTTCCCGAGTGCAGTAGAGCTAGCATCGACCTTTCCACTGTGCAACCAAGTTGAAACCATATGGATCATAGGTGGGGTTGAGGTGTATAAGGAGTCTGCAAGGCATCCCTGGTGTGATCTCATCTACCTCACTCATGTCATGGCTGACTTTGACTGTGACACCTACTTCCCAGAGTTTGATCGGGAAGtgtatgaacagctggaaaCGTTTCACGGTGTGCCGACTGGAATTCAAGAGGACTGTGGCATCAAGTTCAAATTCCAAGTTTTTAGGAAGATTGAGCAATAGTATAGCAGGGGAAAGTGCAATGGTCACAAGCAAGTTACATGCATCATACACAGACCTACACGTATACTGACTGAAGTGAAGTTCATGGTGTAGGTTGAAGACCTATGCCACAAATATTTCCTGCAGGATAACATTGGCTTCTgaactgtattaaaaataatacatttaaaaaatagtaataaaaagtaataataaaaaaatagtattttatatttctactGTGATCTATTATATCAAGGTCAGTTCTGGATTCCAGGCTTTACattgaagtattttattttcattcgtcacttgttttgatgtacaACACATCTTTGATATTTACTCTGAAGTCAAACAAGGATTGGTTTTAATGCAGTAATTTGCACCTAAAGCAGAGGTCCTAAATCAGTtgcaagattatttttttttaacgttaTTGTCAAAACATTGGTTTCAATCTTTATATTTAGGTTTCCATAAATTCCAAACCTAAAATTAAGGTGTCATGTGAcccaaatacatgttttaaaaataatgttttgctgtTACAAATGTGGAGTTTGTAGATATAATACTGCATGGTTTACACTGAATTGTATATGCACTTGTACAGAAAAggaatttattttgtcttttcttggACTGTacaattaattgattaacaGATCATATTTTGACTATAACTGCTTTTGCAACAATGTTTGTCTGTGCTGTGCATCTGCATGCATgctgtttgtttcagtgtggTACAAAATGGTTTGGTTTAGTTTGCTGTAATATAATTtagcatgcattgatttgtgCAGTGTAGAATGAACTTCAACAATAATAAGAACTGAAGCAATTTCATTGGATCTTGGTATGAGTTAATGACCCAAATTAATGATTGTATAAGAGGGCTCCTTGTGTATGATTGTGATGACATGGTTCCTTTGGTCATTGAGGGCCATGCAAGGGGAGATTTATACAGGTTAATTGACAATCATTTGACAGTTGGAATACTTCTcttatttcttaaatattaatttaaatgtgatgtTGAACTTTTTGCTGGCATCTTCTATTAAAGATGATCACACAGAGAATCTTGTCTAACTGGACAAATTCAATTAAGTGGTCTGTCTTCAAGGCTGGCTCTGCCCCTGGCATAGCAAATAGTTGATTGCTATGGGTGTTGTTTTTGGGATACTCAAATGTGTGTCTgagatgatttttatttatccaGGGTCTGAATGATTCAGCATCAGCTGCACTCTCTGTGGGAAGCAAAATCAAAAGGTCTTTTAAACTGAATGATGCAGAATGTGTGTTTCCTTTAAACTGAGTACACTCTAAAATGGATTTGGTATAGCTGTAAGGATTAAAATATTCTAATTGTAAGGTAtgacaatgaaaatgtgaaatgattaTACCAtgatttgtataaatg

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00350 Tyrosine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012732 False 390 mRNA 0.54 4 6052364 6063605
TU49135 True 1953 lncRNA 0.36 3 6060990 6063817

Neighbor

gene id symbol gene type direction distance location
AMCG00012730 NA coding downstream 55252 5990103 ~ 5997112 (-)
AMCG00012715 NA coding downstream 220850 5830618 ~ 5831514 (-)
AMCG00012716 NA coding downstream 246971 5792038 ~ 5805393 (-)
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding downstream 412832 5634465 ~ 5639532 (-)
AMCG00012713 syt10 coding downstream 615383 5424701 ~ 5436981 (-)
AMCG00012731 cry1aa,LOC108426403,LOC108279922,LOC105900698,LOC103023024,LOC107757210 coding upstream 8106 6071923 ~ 6086826 (-)
AMCG00012735 NA coding upstream 170859 6234676 ~ 6239419 (-)
AMCG00012736 NA coding upstream 193013 6256830 ~ 6257924 (-)
AMCG00012742 NA coding upstream 225814 6289631 ~ 6327075 (-)
AMCG00012743 NA coding upstream 298632 6362449 ~ 6378254 (-)
G39377 NA non-coding downstream 157250 5816472 ~ 5895114 (-)
G39371 NA non-coding downstream 240328 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 506295 5545834 ~ 5546069 (-)
G39281 NA non-coding downstream 643604 5388193 ~ 5408760 (-)
G39245 NA non-coding downstream 769678 5220771 ~ 5282686 (-)
G39443 NA non-coding upstream 204418 6268235 ~ 6268938 (-)
G39462 NA non-coding upstream 221638 6285455 ~ 6287935 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 709151 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 722639 6786456 ~ 6795733 (-)
G39561 NA non-coding upstream 834170 6897987 ~ 6898237 (-)
G38490 NA other downstream 3868201 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 4235164 1578955 ~ 1817200 (-)
G38458 NA other downstream 4275143 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5512773 514222 ~ 539591 (-)
G39487 NA other upstream 391904 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 574663 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 1827672 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 3048624 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 4676537 10740354 ~ 10753698 (-)

Expression


Co-expression Network