AMCG00012734


Basic Information

Item Value
gene id AMCG00012734
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6053148 ~ 6056832 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012734
ATGGGGAAGGACAAAGTTCACCCCAAACCCATCCGGCTCATAGCCGCTGCTTGCAACGACATGGGGATCGGAAAAGACGGGCAGTTACCTTGGAACATACCGAAGGAGTTTCAGTTCTTTTTGGACACCGTCACTTCTGTTTCCAGTCcagGCAAGAGTAACCTGCTGATTTGGGGGAGGAAGTGCTGGCTGTCATCCCTTGAGATCACACATCTTTTCCGAAACTGCCTTCACATTGTCCTGAGCAGGACCCTGAGtgaaaagtaCTTTGAGGTCACCATACAGGCGAACCATGAACGATACACTTCCGCTGCTGACAACTGTCTGGCTGAGCAGAGCGCCGATCAGTCTTGA
>TU49104
TGCCGCACCGGTCCGCAATAACCAATTCGTCCCATGCACCCTGGAGTTTAAAAAGCGCAGGGTGAGCAGAGTGACTTCAAACAGACTAGTCAAGATGGGGAAGGACAAAGTTCACCCCAAACCCATCCGGCTCATAGCCGCTGCTTGCAACGACATGGGGATCGGAAAAGACGGGCAGTTACCTTGGAACATACCGAAGGAGTTTCAGTTCTTTTTGGACACCGTCACTTCTGTTTCCAGTCcagGCAAGAGTAACCTGCTGATTTGGGGGAGGAAGTGCTGGCTGTCATCCCTTGAGATCACACATCTTTTCCGAAACTGCCTTCACATTGTCCTGAGCAGGACCCTGAGGTGAGGCGTGTGAAGGTGTGAGAGTGGCCAGCAGTCTCGCACCATTTTGATCATCTGCTGATTACTTGGACCTTCCTTGTAATTAGTTGGTGCAAATTCCCATTATCATGCAGGAGTgtgtaaatgtttcattttgttgtattactcAACCCTTCTGTACTTCACTTGACTGCGTGTTATCTCATTTATTTGCTGATAGCTCTTAGGAATGCTTTATTTATGcggtttacat

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0006545 glycine biosynthetic process biological_process
GO:0050661 NADP binding molecular_function
GO:0004146 dihydrofolate reductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012734 False 354 mRNA 0.51 4 6053242 6056832
TU49104 True 583 lncRNA 0.47 3 6053148 6056572

Neighbor

gene id symbol gene type direction distance location
AMCG00012729 NA coding upstream 13558 6032753 ~ 6039590 (+)
AMCG00012720 NA coding upstream 261663 5767206 ~ 5791485 (+)
AMCG00012721 rfx4,LOC106561413,LOC106573296 coding upstream 290001 5731990 ~ 5763147 (+)
AMCG00012725 polr3b coding upstream 328394 5695131 ~ 5724754 (+)
AMCG00012722 NA coding upstream 406521 5640001 ~ 5646627 (+)
AMCG00012737 btbd11a,btbd11,LOC107757250,LOC107694300,LOC107592010 coding downstream 43749 6100581 ~ 6101610 (+)
AMCG00012741 btbd11,btbd11a,LOC106573291,LOC100703440 coding downstream 136428 6193260 ~ 6231290 (+)
AMCG00012740 LOC105905702 coding downstream 187075 6243907 ~ 6264794 (+)
AMCG00012738 NA coding downstream 208910 6265742 ~ 6269443 (+)
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding downstream 223468 6280300 ~ 6282779 (+)
G39382 NA non-coding upstream 130125 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 405041 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 615986 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 979022 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 1097281 4949240 ~ 4955867 (+)
G39445 NA non-coding downstream 228102 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 455816 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 705133 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 841165 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 1156913 7213745 ~ 7218459 (+)
AMCG00012718 NA other upstream 229633 5807846 ~ 5823515 (+)
G39297 NA other upstream 500381 5552417 ~ 5552767 (+)
G38954 NA other upstream 1679574 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1801554 4183875 ~ 4251594 (+)
AMCG00012641 NA other upstream 4471760 1394839 ~ 1581388 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 419417 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1287618 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 1668656 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1778514 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 2279066 8335898 ~ 8345855 (+)

Expression


Co-expression Network