AMCG00012735


Basic Information

Item Value
gene id AMCG00012735
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6234676 ~ 6239419 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012735
CTGCAATGAAGAGCGTCATTCTCTGGTTGCAGAGTCCGAGCGCAGTTTACAGCATATTCATTGTGAAGATAACAACGCACTTTTTTGCACCAATTGAAATATGCAAGATTCCCAAGGAAGCATCAGCCATCGCATTAACAGCACTAAACTAACAGGAGCTGTGAACACCAGGGTTACCATGTCAGCAAAACGGAGAGACAGGTGCAGTGAAAAAGAGAAGTTCTTGGTGAACACTCTGAGGAGAGAGTCCCGAGAGCTGGACCGCACCCTGCGCTTTCTGAGCCTCCAGTGCCAGAGGGAGCTGTCTACCCTGAGTGGGGCCCAGGAGGAGCTCCAAAGGGCCCTGGCCCGGCTGAGCCAGGCAGGGAGCAAACCTATGGCCTGCAAAGCCCAAGAGGGGAGCTGGCCGTTGCTATGTCCCTTTGAGAGGAGAGGCCCAGAAAGGAGCCGGGGAGAGCACTGCTGTCCCAACCACATCGTGTGCTCCAAGTGCAACCTGAGAATGAGGCTGGCGGACAACGTCACCCGGCGCTTCACCCCCAGTCTGTGGACTATGTACTGCAGAGGCCCCCGGGGAGCTGTAGACTGGTCTTCCAACGACACGCAGGTCTACAGGATCCCCAGCTACATCCTGCACCGTAACCTCTCGGCCTCAGACAATTCTCTGCGCTACCTCCCCTTCATCTCGCTGTAGAAGCCCCGCAGAAAACAGGTAACccataataaacacacaagcaTTGGCTCCTGAGGCAAAACCTCTTCAAATAAATGTCCTTGACTGCTTCAGCTCACGTCGTTCTCCTGAGTCAAACCACTCTGGAAGAAACTGCTGATGACAAACTGGACCAAAGACTGGGAATTCATAGCTGGTTTTGAGTGCAGAGTTTCAGGTAGTTGAAAGTATAGCAGTGAGCAAAATCAATTAGTTTTGGTTTAGCTTGATTCTCCTCGAAAGAAGAGGTTTATAAGTGTGGCCCATTTTGATTACTCTGCAATGCCGCATAGTGCCCACTCTAAATACAACTGACTGAACgtgttttctaaaaatgtgCACGATTTCCAAGATGCTGTATGTCGAATATATAGTTGATGCCTTACAGCACAAAGAAGGCCTATGAATGCCTCCCCTGTAGCCGAAGGTAATTTATTACATGTTGGAGGATCTCAGgggagtgtttatttttcaaactacCCTGTGATCCTGCTTTCTGAAGACAGATTCTCTCCCCAGACAGCCTGAAAGGTTTTATTGCCTGTCTGTGTGCTACTGTGAGGGAAATCTGAAGGCACAGATCAAAGGACAGCAATAGACTTGAATCAGTGACTAACATTCTCAGTTGACTCATAATGAATGTCAAGGAAACCCATTGTTGTTAGTGGACAAATGTcgagaaaatgtataattgtttcggattgcatttctttattttttttttaaccagatgAGTTTGGAAATTAAGAATTGCTTGaagaaaacaggagagagagggagagtatGGGGATCTCCTAACTTTCCTCCCACATTTGTCTTTGCCTTTTATTGATCATTGCTAGGTACAGCAGAAATCAAAAGCCATGAGCAAAAGGCTAAATTTTGTGATGGTGTTTATGGTCTTTATGCttacagttttagtttttagatTGCAATTTTTGATCATGACCAGTTTAGTTCTTTAAGATGTTTAAGATAAGATGTTATACCCAATTATGTGGTCAGGTTTTTTCTTTGGCCCAAATGTGACGAAAGACAAATGAGTTGCTCCTTGTCTCACTGTGCGGTCCATGTTTGGCCTGGACTGGAAACATCCATCAGTTTACAGTTTTTGGTTGGCACctgtgatttaataataaaaaatgaaataaatactataattaagcaaattaagcAAAGTCTGatccaatatatttatttggcatGAAAGCTATTTTGTGAAGTAAAAAAGAAGCTAAGCTTGACTTGGATTGGTAATAAAATCTACAGGAAGTCTTGAAAATGATTTCCTTTTTGtctgaattaataatttgcatttttcatccTATTGTGCAAGTGTCCTTGTAAAAAGTAATCAAAACTTATATCCTATTAAACCACATTTCAGTTTAGTTATTGTGGAATGACATGTAAAGTTTCCCTTGAATACCACAAAAAGTAGACAACATTGAAATTGTAGctatttttatttgctgtacacaaatgcatttcattgaaCAATAGAACAGTAACATGTataatgttatttgtttctgttagCCACAACCctaatatttacacaatacactatttttgtatacaatgtataatgCTTGAACTtcagaacaatacaaaaataaaatacacttggAGAAATTTAGACCCAGAGATTGATTAAAATCTCATGCAGTTCATCCAGTAGAAGTAGATGGTTGGTGCAATAGCAGAAATCTAAGCTATTATAGAGAATAGTCtaagtaaaaatgttttggagtCTCTCTAACCTAAACCTGCTTGCAACACAGAAAAGTCAAAGTAAACGAGTAACACAAAGCAGGCAAGTGAGTTAATTTATTCAGGCTAAGCTGCCCTAATCATGCCaaattaaatctattaaaatgtgaGCTTCATGCTAACAGTTCCATCACTTTATCTTTAGTTAACCCAGCTCCTGCAGCGTCCAGTGCTACAAAATGATACAAATCAAAAAGTGAAGGTTTAACAAAGCATAACCTTTATTTTGTCTTCAGGATAATATATCTTAAAACCTGTCTTTGGCCATTTATAAATGGCTAAAATCTTTGAACTGCCCACACCAGAATCATTTCTAATGTATGGTTTTGACCGGAACACAACATTTACGgtttactgtatataatgtctcttgtgttttaagaaaataacatcCATTATATACAACTGTGAGTATTGAGATTCTGTCCTTTACATGAAACCAGTCTGACTTGCTAGTAGGACAAATGAGTAAATTGCAGctccagaaaaaaacaaaaaaaaaacaaaacacttaatggATGTGTGTGAACTTGAAGCAAACACTTAAGAAACAAATAGGCCAGTAAAAGGTCTGTTACTTATACTTGTTGTCCTGTTGAAGtgaacatttcagtttattctcTTGGTTTAATTGTGTAACAGgtaattgaaaattaaatgcaacaatTGAACAACAAACATGGTCACTTTCTGTCTTcagcaaaacattattaatattatgcttAATCTTCTATTGGGGACTTATGTAAAACCTTACAGGTGAAAATGCAGATCAAAACCATCCAAAAACCATCCTGCTTTACACATAGGACAGCACTTATATTTTTACAGGCATATAATTAGTACAACCTCCAATATCCCATTCATAATGACTTAACGATGCTTTAGTAGGGAATGTTTGTCTATTAAGGACAGTTTTGAAATATCTGTTCTTATAATAGGGTAGCAATCCAGCTACAGCAACATAGCACTGCCTCTTATTACACCATAAAAGACGGATTACCAGTGAAAGTGATCGTAGAGAAAAATCCCAATCAGGCACGATTGTATCATATGCAGGTTTCCTGACACATAaaggaataaatatatttaaaatatatcatgttcatattcatAAGTCTAGCtgcaaagtgtgttttttttgtttattcctgAAACAATACACCCCAGAGATGGAAATATATAGAATgcactgttgtttattttatatattttctctctgtgttttttataaCCTAGAACCTGATCTCTGGGCACTGTCAATATTAAAGAAGATTGGTTTAATTATTGATCAACGAAGATGGGATtgacattcatattattttctatttttatggaTTAGACTTTGATCTGCCAGTTTTTGCATAAAGTGGTTTGATATGATTTTTGCAGATAGGAAGCACTGtggatgttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012735 True 3901 mRNA 0.38 3 6234676 6239419

Neighbor

gene id symbol gene type direction distance location
AMCG00012731 cry1aa,LOC108426403,LOC108279922,LOC105900698,LOC103023024,LOC107757210 coding downstream 147850 6071923 ~ 6086826 (-)
AMCG00012730 NA coding downstream 237564 5990103 ~ 5997112 (-)
AMCG00012715 NA coding downstream 403162 5830618 ~ 5831514 (-)
AMCG00012716 NA coding downstream 429283 5792038 ~ 5805393 (-)
AMCG00012714 LOC105020308,LOC104958207,LOC100694258,LOC106609412 coding downstream 595144 5634465 ~ 5639532 (-)
AMCG00012736 NA coding upstream 17411 6256830 ~ 6257924 (-)
AMCG00012742 NA coding upstream 50212 6289631 ~ 6327075 (-)
AMCG00012743 NA coding upstream 123030 6362449 ~ 6378254 (-)
AMCG00012744 NA coding upstream 173312 6412731 ~ 6435631 (-)
AMCG00012745 NA coding upstream 212590 6452009 ~ 6460026 (-)
G39377 NA non-coding downstream 339562 5816472 ~ 5895114 (-)
G39371 NA non-coding downstream 422640 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 688607 5545834 ~ 5546069 (-)
G39281 NA non-coding downstream 825916 5388193 ~ 5408760 (-)
G39246 LOC100846954 non-coding downstream 984205 5234162 ~ 5250471 (-)
G39443 NA non-coding upstream 28816 6268235 ~ 6268938 (-)
G39462 NA non-coding upstream 46036 6285455 ~ 6287935 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 533549 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 547037 6786456 ~ 6795733 (-)
G39561 NA non-coding upstream 658568 6897987 ~ 6898237 (-)
AMCG00012732 NA other downstream 170859 6052364 ~ 6063817 (-)
G38490 NA other downstream 4050513 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 4417476 1578955 ~ 1817200 (-)
G38458 NA other downstream 4457455 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5695085 514222 ~ 539591 (-)
G39487 NA other upstream 216302 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 399061 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 1652070 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 2873022 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 4500935 10740354 ~ 10753698 (-)

Expression


Co-expression Network