AMCG00012738


Basic Information

Item Value
gene id AMCG00012738
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6265742 ~ 6269443 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012738
AATATTGTGCACATAATCAGTGGATACCAGTAAATCACGTGTTCATTCTTAATGAACTTCTCATTGTCTATAATAACAcctttgttaaacattttatttttgggcaTGAATCATTAAAAGACCCGGAATTCATGTGTAGGTTTTTGTTTCCTACACGGAGAGTTTTTGCAGTGGGTTCAGCTTCCGGTGCACAAAAAGCATGGCGACAGGACAAGCATTCAGGTTAACCTGTTTATCCACACGATTGCTGcgttttgcaaaacaaaaccgtTTTCAAGctggaAATGTGAAATGCGTTCATCCTAAATCTACATATACTGGTTCTTCAGATGACTATGCCTGcaaAGTTGACCTTGCCTTGACATCTGATGGCAGAACCATTGTGTGTTACCACCCTGCTGTGGACATTCTGTATGAACTCACCCAGCCAATCCCCAGGCCAGACCCTTTAACCAACCCTGCAGAAACGCACGACCAGGTACTGAAGACCCAACTAAGTAAAGAAGTTCTACAGAACAAACCAGGGCCCACTATTGAAGAGCtgagtaaaatgttttacaccACCAAACACCGCTGGTATCCAGTTGGACTTGACCACAGGCGACGTAAGAAGACTGATACTCCAAAAGACAGATAATGTCTGAAATCACTGGTGCCCAGAGAATGACGACTTCACAGTGTGTAAAGCAGTTTGAAACACGTGATGGAAAATATGGATTTCTTAACTGCTCTTTTTTcttgtatattatatttcagCTGTGTTCTGGAATTACTTTACAACATGTGCTCATTTTGTGTCTATCCCAAATAAAAGTGGTAATTCCGAGTGAATCTGGTTCAACAGTGATTGAAACACCTTCCACACAAGAAAAGCATATTCAAAGTGGTTAGGACCCACTTAAGTATTGGTAACCAGTCCTAGTTATCGGAAGACAGTACAGCAGGGGTTAGTTGTCAATATCAATTTATCACCTTCGAAAGACTTGGAACAATTGtattttgatcaattaagcagcaGGCACACTGTTCATTTCAATCATTAATAATTTGGAATGTAAAAACCTGACATGACAAAAAGAGCTGTTTCTTGCTTGAACTGAACAAATTacccatttcaattaataaaaaataaaaaaaagttcgAAATTAATTCTAAATTGATGACCTCTAAAGCCCCCAGTAACCGGATCATCAACTCTagcagaaaataatacagtagcTGTAACCGATATTTCTGTAGAATTcgtgttatgttttttttttaaagcattattgcTTCTAGGTCATTGTCAAATGCTAGACATGTTCAAGTAAGGAGCTGGTAAATAAAA

Function

GO: NA

KEGG:

id description
K17423 MRPL42; large subunit ribosomal protein L42

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012738 True 1331 mRNA 0.38 5 6265742 6269443

Neighbor

gene id symbol gene type direction distance location
AMCG00012740 LOC105905702 coding upstream 948 6243907 ~ 6264794 (+)
AMCG00012741 btbd11,btbd11a,LOC106573291,LOC100703440 coding upstream 34452 6193260 ~ 6231290 (+)
AMCG00012737 btbd11a,btbd11,LOC107757250,LOC107694300,LOC107592010 coding upstream 164132 6100581 ~ 6101610 (+)
AMCG00012729 NA coding upstream 226152 6032753 ~ 6039590 (+)
AMCG00012720 NA coding upstream 474257 5767206 ~ 5791485 (+)
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding downstream 10857 6280300 ~ 6282779 (+)
AMCG00012750 NA coding downstream 114362 6383805 ~ 6412746 (+)
AMCG00012749 asun coding downstream 168600 6438043 ~ 6453810 (+)
AMCG00012747 NA coding downstream 275789 6545232 ~ 6579959 (+)
AMCG00012746 NA coding downstream 356551 6625994 ~ 6627816 (+)
G39382 NA non-coding upstream 342719 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 617635 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 828580 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 1191616 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 1309875 4949240 ~ 4955867 (+)
G39445 NA non-coding downstream 15491 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 243205 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 492522 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 628554 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 944302 7213745 ~ 7218459 (+)
AMCG00012734 NA other upstream 208910 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 442227 5807846 ~ 5823515 (+)
G39297 NA other upstream 712975 5552417 ~ 5552767 (+)
G38954 NA other upstream 1892168 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 2014148 4183875 ~ 4251594 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 206806 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1075007 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 1456045 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1565903 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 2066455 8335898 ~ 8345855 (+)

Expression


Co-expression Network