AMCG00012740 (LOC105905702)


Basic Information

Item Value
gene id AMCG00012740
gene name LOC105905702
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6243907 ~ 6264794 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012740
GTTTTACGTCATCAAGCGGGGTCCTTGTCGAGAAGGTCCTCACAGAGATGCACATGCTGTTTACATGTGAATCGGGTTGTACAAATTcgagatttatttttactgtcagTGTAGGGTACCAACAGAAGGGGTTTTTGTTGGGTTTGTGGTTCAAAATTGACCACATATACCTTAATTTAAggattcaataataaataataaactatgaGTTGTCAGATCACTTGTGTTGGATGGGTAAGCCGAGGAGCTGCAAAGGAAAGTCCTGATAAGGTTGAATTGAGCAAGGAAGAATTGCAACGTCTGGTCAACGAAGCAAAGGAGCAACTGCGGGAGGAAGGAGAAGATGCcgaagatgaagatgatgagGGGATGGTGAGCGGCCCGGAGCTGAGTGACGAGGCGGAAGCGCCTCAAGAGCCTGTTGAAGACGATGAAAACGAGAGCGGCCGAGAGGCGGTGGACGAGCTGGCGGAGTACGGCCTGGACAAATATGACGAGGACGACACAGATGCAACAAACCTAGGAGACAGCCTGGCAGGGCTCACTGTATACTGCAGTAATGAAGAAGACCCTTATATCACTATTAAGGACACTGATCAGTATGAAAGGGAagattttcaaattaaaccaaatgaCAATCTCGTTCTTGCTGGCAGGGCAGAGAAGGAATGTTGTAATCTGGAGATACATGTGTACAATTCTGAAGAGAACTCCTTTTACATACACCATGACATTCTCCTGCCTGCCTATCCTTTGTGTATTGAATGGCTGAACTTTGACCCCAACCCCGATGAAAgacaagGAAATTATGCTGCAGTTGGCAACATGACTCCTGTGATCGATATCTGGGACCTGGATGTGGTAGACTGCTTAGAGCCAAAAGCAGCTGCAGCCGCCGCGGAGGCAGTCGAGGGCCATGCCGATGCAGTGCTGGACCTTTCCTGGAACAAACTGGTTCGAAATGTGTTGGCCAGTGCATCTGCTGATAACACCATAATACTGTGGGACCTGGGGCAGGGCAAGCCAGCGACTACTCTgacaagacacacagacaagGTTCAGACTCTCAAATTCCATCCATTTGAAGCTCAGACCTTGATTTCTGGATCATTTGATAAATCAGCAGTCCTGTACGACTGTCGCAGTCCTAAAGATAGCCACCGAACATGGAGGTTTAGTGGTGAGGTTGAACGAGTCACATGGGACCATTTCTCCCCGTACAACTTTTTGACCAGCACCGAAGATGGCTTTGTTTACTGTTTGGACGCCCGCTCAGATAAACCTGTGTTTACTATCAAAGCTCACGATGGGGAAGTATCTGGTTTGGACCTGAGCAGTCAAATAAAGGGCTGTCTTGTAACCAGCTCTGCAGACAAACACGTGAAGATCTGGGATATCCTTGGAAACAAACCCAGTCTCATCCACTCCAGAGACATGAAAATGGGGGTATTGTTCTGTTCATCCTGTTGTCCTGACTTGCCATTCGTGTATGCTTTTGGTGGACAAAGGGAAGGACTACGAGTCTGGGATATAAGTGATGTTGCAGCAGTCAACACAACCTTTGGTAACCGGGAGAAGTTGGTTGTAAACACCCTTCCAGAGACAGCGGGGCCCAGCAGCAGCGGGACAGCCATGGAGTCATAGTTGAAGCCAGTCCAATGGAACCAAAAACTTCAGTAAAGTTAGCAGAAAGACCGTGGAGCTAGAAGACTGCAATCGGCTGCCTGTGGTGGTCTATGGCAGGGGTCTGCACtacagccctggtcctggagagctgtaGTCCTGTAGATTATTACTAGAAACTTAAAATGATCAATACGTAGAGatccaaataaaatgtgtatttgtactATTTAAGCAAACAAGTTGTGCCAATTAAGCAATTTGGAATTCGGACCACTTTCTCTTCAGGACCAGATTGCCAGAGCTTTAATTTATGATACTAGTTTGTGGTCTACACCAGTGAAACAAAACTTCACTGGACACAGCTGTGAAATGTAACTGGTTGGAAACgtttccttattttttcctctctctcctctctaatTTCATGTTCACTATTGCTGTATGTAGTTgcattttgaacatttaaatgacCATAGTTGgcttacaaagaaaaaaggaaaacaagaaactaGGAAAGGGAagggttgatttattttactactATAAATATGGTATTATTCCTAAATGTTACAAAGAAACCTTTTATAGCAAAAGGCCACATTCAACAGAATAAACTGATCATAAAATCATATCACCactgtctgtattttgtttgttttgttttatagaaaatgcacttagataaatagataaagcCATTGGAGAACAATTTAAGAGACCCAATCATAAAGGCGATGTACACAACACTGGTAAAGCCAGGTCATGATATCTAAGTACTTGTCATGGGGTTTGAGAAGAGTATATCTGTACCTGCATATTAGCCTATGGAGCCATTCtttaacaaacaatacattggCTTGTTACATGATTTCATTGAAGAAACAtctaagattttattttcacattctgaaGGCACATTGGGAAGAATCGTACCTAGGAGGAGAAATGTGCCTCAATTCCGCTGATTTGTACGGGCTACATTATATATGGCatttgtgattttgaagacatttgaaatgtattcatacaataaaaataaatgcagaatagTGTCTGACATTCCACTTTATGTGAG

Function

NR:

description
PREDICTED: periodic tryptophan protein 1 homolog

GO: NA

KEGG:

id description
K14791 PWP1; periodic tryptophan protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012740 True 2701 mRNA 0.43 15 6243907 6264794

Neighbor

gene id symbol gene type direction distance location
AMCG00012741 btbd11,btbd11a,LOC106573291,LOC100703440 coding upstream 12617 6193260 ~ 6231290 (+)
AMCG00012737 btbd11a,btbd11,LOC107757250,LOC107694300,LOC107592010 coding upstream 142297 6100581 ~ 6101610 (+)
AMCG00012729 NA coding upstream 204317 6032753 ~ 6039590 (+)
AMCG00012720 NA coding upstream 452422 5767206 ~ 5791485 (+)
AMCG00012721 rfx4,LOC106561413,LOC106573296 coding upstream 480760 5731990 ~ 5763147 (+)
AMCG00012738 NA coding downstream 948 6265742 ~ 6269443 (+)
AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding downstream 15506 6280300 ~ 6282779 (+)
AMCG00012750 NA coding downstream 119011 6383805 ~ 6412746 (+)
AMCG00012749 asun coding downstream 173249 6438043 ~ 6453810 (+)
AMCG00012747 NA coding downstream 280438 6545232 ~ 6579959 (+)
G39382 NA non-coding upstream 320884 5922614 ~ 5923023 (+)
G39321 LOC100846954 non-coding upstream 595800 5647774 ~ 5648107 (+)
G39279 NA non-coding upstream 806745 5436833 ~ 5437162 (+)
G39193 NA non-coding upstream 1169781 5037547 ~ 5074126 (+)
G39186 NA non-coding upstream 1288040 4949240 ~ 4955867 (+)
G39445 NA non-coding downstream 20140 6284934 ~ 6287936 (+)
G39490 LOC103376870 non-coding downstream 247854 6512648 ~ 6536393 (+)
G39538 NA non-coding downstream 497171 6761965 ~ 6762278 (+)
G39560 NA non-coding downstream 633203 6897997 ~ 6898230 (+)
G39586 NA non-coding downstream 948951 7213745 ~ 7218459 (+)
AMCG00012734 NA other upstream 187075 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 420392 5807846 ~ 5823515 (+)
G39297 NA other upstream 691140 5552417 ~ 5552767 (+)
G38954 NA other upstream 1870333 4370313 ~ 4373574 (+)
AMCG00012681 NA other upstream 1992313 4183875 ~ 4251594 (+)
AMCG00012748 itpr2,LOC100196824 other downstream 211455 6476249 ~ 6517983 (+)
AMCG00012763 NA other downstream 1079656 7344450 ~ 7381559 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 1460694 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 1570552 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 2071104 8335898 ~ 8345855 (+)

Expression


Co-expression Network