AMCG00012744


Basic Information

Item Value
gene id AMCG00012744
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6412731 ~ 6435631 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012744
ATAAAATCAATTTAATCGTATACAGTTTTTCATGTGTAGAAAGCTTTAAGCAAGAGCAAATATATGTTCCTGTCCAGAATATTATTGCCAGGTACACAAAGTAAAACTGTTGAAATAGTTCAGCTTAATTCCCGGCTCCTTTGTCTTGTCAAAGGGAGTTGTGCAGATGCCTTAGCAGCGAGCAGGTTGTGCCAGGTCCTCCAGCAGCGCCACAGCTCCGCCACACTGCGCCACACTGCGCCACTTTCACTTCGCTCCCACTGAGCGCCCTGTTCTCACGCTAGTGCCTTTGTGCGCACCTTCCCAACACTGCAGCCAGAAACATCGCAAATGACTGCAAGGAGCCAGCATGGAGCAGCCTGAGGACGCTCTTGAGACTGAGCCCAAGTTTGAAGATGCTGTGGACTGGACTGACTTTCCATGGAGCGAACAGACCGACAGTGGGACTGGGCATTGCACTGCCCAAACACAGACGGTTTCCATTCCCACCGAGGAGAAGGAGACCCAGACCAGCAACCCTGTGATAATGCGACTGGATTCCACCAGGGCATCCTCCAGACAAAACCATGCATCCTCGTTGGAAATCGATGGATTGGTAACACCACTCTTCCAGTTTGACAGACAGGCACCTGCCCGGATTTCCACCTCCCCTACCCTGAGGCGCATGAGGAGAAGCACCAGACGCCCTCAAATGGATTTTAGGGACCCTGGGAAAGAGACCCCGGAGCCTAATTTATCTCATTCAAAGAGTACAGGGAATATTACATATCATGGGAGTCAGACATCACctggaaacacacagacatgcccAGTGGCAGGAAGTCTTCCCAACTGTTTTCCAGAAGAATTTCTGCCAGAACATTTGCCTAGTGTATCTCCTTCCGATGGAAAGAAAGATGAATTTAATGCACACAGTCTAAATAATGGAGTGATTGGCAGAATGCTGGAACCTCAGTCTGCAAGAGAGAGTGTCAGGTTTGACCATACAGAGGATTCAAATGAGATGAAGGAATCAAACCAGAAAGGGCTGCAGGAGCGCCGGCGAAGCTCTGTGGTGgctaaaGACAAGATGAAGTTGTTATGTGATGTGGAGAAGTGCCTTTCTTCAGTACACATCCAGGACTGGAGGAATTGTGACTTCCAACAGTACAAGGACAGCACACTGGCCGAGTTTTTGAAGATGCACCATCGCGAGGTGGAGTTTCAGGGCTGTCCCCAGGACTACAGGAGAGAAGAGGCCGTGTGGGAGCTCTTCACCAGTGAATGTGTCTACTTTCTAGATCAGCTCATGGTTCTGAAAGAGGTGTTTCTGAGCACCCTGACGGATTTGCAGAGCAAGAACTGTCTTCTCGATGTCGATGTCTGGCGACTCTTCGCCAATCTCAATGAGCTGTGCCTGGTGAGCTTCGGCTTCCTCAACCACCTCTTGCATGCCGTTAAAGAATCTTGGGAATTAACCGACACAAAAAGTCCTACGTCTCTGAGAAATTTACTTACCAAGGCAAGTACAGCAGCAACTGTGgtTTTTCAAGAAGGCATCTGTTACTGTCAGCAAAAATATTGCCTCAACTACTCATCCGCAGTCTTTTACCTCGACAACCTGAAGCAGAGGGAAGATTTTGGGACCTATCTGAAATGGTGTGAGCGCAATGAGCAGTGTCGACGCCTCCACCTGACTGACCTCCTGGTAGCACCAATGCAGAGGTTCACCCGCTACCCTTTACTACTGAAGAACATTGGCAAGAGGAGCAGCAGCGAGGAGGACAAGAGTGCAGTCCAGTCCTTGGTGGAGCTGGTGGAGAGATCCATACAAGACCTTGAAGGGAAGGTGAAGTGGCTTGATAGTTTCCAGAAGGTCCAGCGACTGAAAGAAATGATCATCTGGCCTTCATTTTGGGAGCAGCACAAGAGAGCCTTCATCCCTGAGAATTTGAAATATCTCCTGAAGCCGGTGACTCCTGAAAGCCTGATAACACACCATACACTTTTACATGAGGGAAGGTTAGTTCTTGCAGAAAATGCAAAGCTGCAAGATATCTACCTGTTCCTGTTTGATGAATTCCTCCTGATTACCAAGATTAAAAGAAGTAAAAAGAAATCTTTGGGGTCAGAGCTGAACAGTCTGCGTCTCACAGTGAACCAAGAGTTACAGGGAATCTTTAAAGAGGGTGGCACCTTCACTGTACTGGACCAGCCCATTTCTGTGGACCGACTGCAGATAAAAAACATTGATCAGCTGAATACGACAGTAACTGGACTGCACAATTCCTTCATCCTAATGCACCAAAACAGATACCAGCAGTGCATAGGAGTCTTCATCCTACAGGCGCAGTCCGAATCGGTTAAGAAAACATGGATTTCGGAAATCGAAAAAGCGATGGCAGCGCTGTCTGGGTCAGACTCTCAGAAAAAACGTGGCACGAGCACCTCATTATGGGTGGAATCATCACAGATTTAATTCAACACCCAGGGCCAGTTCTGTTGAGACCATGCAGCAAATTGAAGACATACAGGTGATTTAGTTTTGTAAATCATCAAAAGtaacattttgatattttattcaagtttttcctgtttttttttaggagagaaaaaaaaagttatgaaattgataaaagcatatttttatgTGCAATATCAGACTTGTTTAcgatattaacaataataacaaatgtctTCGTGATGCTTTGTATTGACATTTGAAGATGGGGCACACCATTCAAAAGCTACTATAAattactataaataaattaaaatatgtataaaaatgtctCCCACCTTCCTAGCTTTGGTAGACTTTGTCTGGAAGGCTCTCAAGTAGCCAATATGACTGCTATACAGGAGCTGTTGCTTAAGTGTACTTAGCTGTATaaacaacattacattaatcTGAAGCAGGTGGAAGGGCTTCTATATTGTAGGTAAGTATCCCTATTGAGGACCTGCTGCAGCACTGCCAGGCTTCTGAGGGTACACAATTCAATGTAAAATTACACTGCGGGTACAATGACCAGTCTGGTTCCAAATGTGTTCATATGATGGCTTTCAAATGAGACAGCTGCAATGTTGTCGAGAGCTGTGACTCAATAAGACTtctgcagcaaaaacaaaaaagactaaACAAAGACAACATAGAAACACCTAGTTTTATTTACCATTAGCCATGATGGCAAATTAGAAAATGACGGTTACATCTGGacataaataacacttttttcatgACAATAATCGTGTTCTATTACCCATTCTCAAATAAAGTGGCAGTCTCCTTCTGGCCAAGCACAGACACGAGGGTCCGTGGACCGAGCTGAACAAATGAAAGATCAAACAGAAAAACCTTTTGTGGCTTAAGGCACAACTACAGGAACACAAAACATAACGTTGGACTTGGAAATGGCCAATGAATGCCAGTTCAAACATTGACATTTCATGCACAACGATCTACATCAAGGTGTAACCAACAATTAAGTGTGTAGTgtcatcatttaaataaacaatatattgtgAGACAACATGGAGAATCAATCTGTAGCCactaaatagatttttttgaaatcaatgttattttacaccattccttttttatttttattgtacagAAATTAGTcatcttaatattttttttctttttttttttttctttacacaatATTAACATCATTTGCAGTGATAACCAAAACTTAAAATCAACATATTGAAGGACTAGAAGGAAAGTTTCAATGGTCTGGCACTGTCTTCAcaataaaagaatacaaatatatttctccGCCAAAGGACTCCGCTCTAACGCATTTCGAGAGTCTTGCGGGACTCAAGGGGAAAGGGGGAAACGAGGGTCTCTCTTAAGTGGCTGTGCGATATTTTGCATTAAGATTGCAGAAAAGTGCGAACACACACATAGGTAGTATGGAACTCCATTCCTCAACCAAACAATTCAATACAGTGTCGAACGTAATTCACACACATATGGAAACTGGCCGGGGACTGTCAGCAAATGAGTTCAGACATTCTTGCAGGGTTACCATAATCCTATGTAAAAAAAACCGAGAGGTAGACTGAAACATAAAGCCACACAGATCTGTTCTGAAGGTTGCTTCACTGTAAACTGCCATAGCAAGCCGAATTTGAAAATTGACCAATTAGCAGTAAAGCATGATTGAACTTCTGACAAGCATGAACATATTCCTTCCAAAGGGTTACAGAAGACATCACTGATATATATCTGGGTCATAACGATGTAACTGCACAGGCTCATTGTCTGTCGGGGCCGTGACACCCAAAATGTGACACCTGAGTTTTACCCACTCAAGGCGTAGGCCTAAAGCCAGTCAAAACATAGACCTATCAACAAAAGCAATAGAAAGTGGCTTCCCGCAATTAATGCAACTGCAGTAGGGTACACATTTATCATTTGCGATTGGCGGGTAGATTTCAGTTTTGCTTCGATATAGGCCTTAGCGTGTGCTGGGACATGCCTGTCaataaacaggaaaatgcaGCTGAGAGGTGCTCTGAGATGAGCATGTCTTCAATCTGATATGGATGCCCGGATGTCCGGAGTTGTCCGATGCCTTACACACTGCATTCCTGGCGCATATGTCTCCTTGGACTTCCCCACAGTAACTAAAGTTATCCATGATTATTGCTTCATATAGTAGGTGTAGAAGTACCGCCAGCTTTCAAATAATTGCTATAAACAGCTGTTAATGTTTATGCATACAGGTAACTTAAAATACACGGTTGAAAACCAGTTATATCCAGTCTGCATATACCTTACTAGGTTTTAATACAAGCACCAAATTCTGTatatcaaaaaagaaaatgcaaaaaaagacattccattttgtataaataacagCAGCATTGCAAAATAGGTTAATACTGTACATTAATGTGGATCACAATTCTACACGTGCCAAAGTTCTTGAGTATGCATGTAAACTAAATCGTCAGATCCTAAATGATGTCCCATAACTATCCTCTTTCTTAGAAACTGCTGCAACATTCAAAAGAAACCATAAACAATAAGCAGGACTACCATGCAACTAAATAAGAGCAAAGAATGATCGGTCATCTATGACTGGTTCTCTGGGATTGAAGGAAGCAAAAATTAAGGACTTGAgctcagaaatacagtgaaacTATACATGGCATTCTTTggtaataaaattaaattccaTAGCTGACACCATCTCTTGTGCCTTAAGCCAGGAAAACCTCTCTGACTGGAAATCTCAGATCTGCCtggagcaaaaaataaaaacaaaaatggccagCCTCAAAACAATGGTTCATTCTTCTTATCTAGTTCATTACCTCTCTTCTGCCATCAACTTAAAAACACCTAAATCTATGGCCTAAAGAGTATGGCTGAATCCAAATATATTCATACCAGTGCAACTAAAGTGGAACTAAAAGGTGGTTGAGCCAAGATGGTACAGGTGTCTGAAGTATTtttcaacagaaataaaatgtaatcatatacaatatatgaataggttacataatttatttatttcactcccAGTATTTCCCTGATCCTAACCTGGCTTACTTAACCTTCAGAAAGGGCTTCTcaggagtttgtttttttgaacaGCTCCTCAGTGCACAACCTTTCCAGCTGTTACCAGTTTGAACCTTTCCTCACAGCCATTTTTGGTGgatatattaattgtatgtgtgtgtgtgtgtgtatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012744 True 5721 mRNA 0.42 17 6412731 6435631

Neighbor

gene id symbol gene type direction distance location
AMCG00012743 NA coding downstream 34477 6362449 ~ 6378254 (-)
AMCG00012742 NA coding downstream 85656 6289631 ~ 6327075 (-)
AMCG00012736 NA coding downstream 154807 6256830 ~ 6257924 (-)
AMCG00012735 NA coding downstream 173312 6234676 ~ 6239419 (-)
AMCG00012731 cry1aa,LOC108426403,LOC108279922,LOC105900698,LOC103023024,LOC107757210 coding downstream 325905 6071923 ~ 6086826 (-)
AMCG00012745 NA coding upstream 16378 6452009 ~ 6460026 (-)
AMCG00012752 NA coding upstream 171563 6607194 ~ 6619758 (-)
AMCG00012757 strap,LOC106576022,LOC106609126,LOC105020178 coding upstream 380177 6815808 ~ 6823765 (-)
AMCG00012758 NA coding upstream 492899 6928530 ~ 6981212 (-)
AMCG00012759 NA coding upstream 580474 7016105 ~ 7024518 (-)
G39462 NA non-coding downstream 124796 6285455 ~ 6287935 (-)
G39443 NA non-coding downstream 143793 6268235 ~ 6268938 (-)
G39377 NA non-coding downstream 517617 5816472 ~ 5895114 (-)
G39371 NA non-coding downstream 600695 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 866662 5545834 ~ 5546069 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 337337 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 350825 6786456 ~ 6795733 (-)
G39561 NA non-coding upstream 462356 6897987 ~ 6898237 (-)
G39580 NA non-coding upstream 714986 7150617 ~ 7150823 (-)
G39662 NA non-coding upstream 1235605 7671236 ~ 7671642 (-)
AMCG00012732 NA other downstream 348914 6052364 ~ 6063817 (-)
G38490 NA other downstream 4228568 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 4595531 1578955 ~ 1817200 (-)
G38458 NA other downstream 4635510 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5873140 514222 ~ 539591 (-)
G39487 NA other upstream 20090 6455721 ~ 6456178 (-)
AMCG00012751 NA other upstream 202849 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 1455858 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 2676810 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 4304723 10740354 ~ 10753698 (-)

Expression


Co-expression Network