AMCG00012745


Basic Information

Item Value
gene id AMCG00012745
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6452009 ~ 6460026 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012745
ATGGCTCCTTTACCCTCAGTCCTCCTGTTAGCACTGCTGGGCCTTGCATTATTCACTGTCCTCTCCTGTGAGGGTAATACAGCAAGGCCTCACAGCTGCCAAATGGTCACAGTGTTCCAGGGCATTCCTGACAAACGGGTCAGCGCCGGGACCATGTTCTACATCCCCATCCCTCCGCTAGCTTTCCAAGGACCCGTGAAGCACTATAAGGTCTTCTTAGCAGGAACCAGCAATATTTTACCACACTGGCTAGACTACAATCATCAAACTCACAGCCTACAGGGCCTGGCAGTCAGTGAGGAGAGTGCAGAATACACCATTGGAGTGACGGCAGTGGGTTTCTGCCACCAGCAAGCACTTTCAATGACACATTTCCATCTATATGTAGGCAATGGGCCTGCCAGTCTCAACACTAACACAATGAAAGGGCATGAGTGGCCAAAGACAAATACCATCAACAGTCCGAGATGCCCTGCTGATGAAAGAGCCACATATGCCACCATAATCTTGCAGGTTGACATCTTCTCCCTGGGCATTGCTGAGCGTTTACGCCTGGTCTCCACTATGGCGAAGTACCTCCATCTTGATCCCTTCTCCGTCAAGCTGCTCTCCCTCCGAAATGCATCCCAACTCCAGCTAGATAAAAGCACCCTACTGTTGGAGCACACTGGCACTGGGAAAGCCACTGACAGAGCCGAGCTGACCTGGCCAGTGGATTGTGGGGCTTTTGATATGTTACCTGAACTGGTTCACATTCTGCAGTACAGCAGTCAATCAGGCCACCTTTCCCAGATGCTGGGGGTCCCCTTGACTGGCTGGAGGGTCTTCAGCAGGGGAGTAGAATCTACAAAGAGCAGGAATAGGGCACGTCGGCAAATCATTCAAACTCCTACCCCAATGATGACACTTGCAACGCCGACCTACATCTCCACATTTGCAACACAGTTGCCCAGTTTGTACTACGCAGGAATAATCCCACCGTCCAGGCTGGCGTCCTTACCTGTGCAAGTCACTGAAAGCTTGCGTGACAAAGGGAGTATGGACCCTGCCAGTCATGTCTGCCTGCAGGAAGAAGGGCTGGCTTCAGTCATTGCACACAGTGAGCGAATCCCACTTTCACGGTCTCCATGCTCGCTGCCTCCCATCACAGAATTAGAAGGCTCTCTGAGCAGGTCTAGGTTGTCTGGACACAGTAGTGCGACAGCTctactgacagacacactggaAACCATCACTCCAAGCGTGAGGCAGACGCCAAGGAGTTCAGCAGAGCTCAACGCAGATGAAATGACCGAAAACACTCTACACGCCAATCTGCTGCAAGACTCTGAAACAATCTCTGCGCTCCCCTCATGGAAAATCTATGTACAATCATCCGCCCTCCATCCATACTTAAGTGCAACAGTCGGGGGAAAGTTGGCAGGAAGTTTCAGTTCAGCTGTGTTTCAATCGCCCTATCCAACACCAAGATACACAGGTGCTCCAAACCTCTCCCCCTCTGTTCTTCATCCTATCGAGGCTCTGGTTGCCACAGTGGGGTTCCTGTTTAAGTACAGCATCCCGTCAGACACTTTCTCAGATCCAGAAGACGGGGGCACAGACAACCTTACCTTGGACATGGTACCAGCAGATGCGTCTCCCTTGGGACCCGAGTCCTGGGTCAGGCTGGACCAAACACTGAGACTTCTGTCTGGGTACCCGTTGGACTCTGACATGCAGTACTCCCCACTGGAGCTCATCCTCAAGGCCAGAGACAGAGGGGGCCTTTCCACTCAGCTCCTCTTCACCATAGAGCTACGACGTCCACTGTCTCAGCCCTGCCACAGCTACACCCTCAGCACCAAGAACAGCCTGCACTCCTTCATGCGAGACAGACGGAGGATCGAGATGTTCTTAGACAGAATGGCCAAATATCTCAacgacagcagcagcagtcacaTTTCCCTGTCCGGCCTCAAGTCAGGGTCCACAGTGCTAACGTGGCACAATTTCTCTCTGTGCCTCGCCACCACTGCCACCGCCAAATCTCTGAGCCGGTGCCCCAAGCACAAGATCCAGGGAGTGCTGTCTGAAATGAGAACCGAAGCGGGCGGGGTGAACCCAGCCTTTCAAGAAGCCATGCTCCCAGAATTCAGGATCATCGGAGTAGGAAACATGACGTACGGAGGGGTCTGCTTGTCGCCCACTGACCTGGACTATGCCAACACCACTGCCTCCACTCCCCAATCAGACACCATCGCCTTCGCTGAGGCCTTCGGACAGACCGCCCTGCTCCAGCTGCCATCTCGAATTAGACATCTTAAAGCCCAGAAAGCCACCTGTGTTTCCTCGGGATatccccccaccacctccaCGGCTGTGGGAGAGTCGGGGGAGTCCTTGATGACTTCTGCTTCGGCCAGCTCCTCCTTCTCACGGTCCTGCACCCCTTTTAACCTGGAACAGGGAACAAGAATCGCACCACTTCACTTTAACCCATACCTCGCAGCTCAGAGTATTGCAGTCATTGCTGAAAATCCCTCTTTCTTCAGGAAGTTCTCAAAAAGGTCCTTTCCGTTCTTTTCGGATTTGTCCTCCTtatcctccctcttcctccctcgcTTCTTGCGCTCCTCTTCCTCGGGGGGTTTGCTGCGACAAGCAACGATGCACTCCAGGACGCGCTGGTGGCGGTCCGTGCTGCCCACGTGGGTCCTCACAAGTGTCTCCAGCTCGTTCCACATGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012745 True 2727 mRNA 0.54 9 6452009 6460026

Neighbor

gene id symbol gene type direction distance location
AMCG00012744 NA coding downstream 16378 6412731 ~ 6435631 (-)
AMCG00012743 NA coding downstream 73755 6362449 ~ 6378254 (-)
AMCG00012742 NA coding downstream 124934 6289631 ~ 6327075 (-)
AMCG00012736 NA coding downstream 194085 6256830 ~ 6257924 (-)
AMCG00012735 NA coding downstream 212590 6234676 ~ 6239419 (-)
AMCG00012752 NA coding upstream 147168 6607194 ~ 6619758 (-)
AMCG00012757 strap,LOC106576022,LOC106609126,LOC105020178 coding upstream 355782 6815808 ~ 6823765 (-)
AMCG00012758 NA coding upstream 468504 6928530 ~ 6981212 (-)
AMCG00012759 NA coding upstream 556079 7016105 ~ 7024518 (-)
AMCG00012760 NA coding upstream 753719 7213745 ~ 7235643 (-)
G39462 NA non-coding downstream 164074 6285455 ~ 6287935 (-)
G39443 NA non-coding downstream 183071 6268235 ~ 6268938 (-)
G39377 NA non-coding downstream 556895 5816472 ~ 5895114 (-)
G39371 NA non-coding downstream 639973 5778290 ~ 5812036 (-)
G39295 NA non-coding downstream 905940 5545834 ~ 5546069 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding upstream 312942 6772968 ~ 6847396 (-)
G39556 NA non-coding upstream 326430 6786456 ~ 6795733 (-)
G39561 NA non-coding upstream 437961 6897987 ~ 6898237 (-)
G39580 NA non-coding upstream 690591 7150617 ~ 7150823 (-)
G39662 NA non-coding upstream 1211210 7671236 ~ 7671642 (-)
AMCG00012732 NA other downstream 388192 6052364 ~ 6063817 (-)
G38490 NA other downstream 4267846 2183885 ~ 2184163 (-)
AMCG00012646 LOC107658747,LOC107707963 other downstream 4634809 1578955 ~ 1817200 (-)
G38458 NA other downstream 4674788 1776854 ~ 1777221 (-)
AMCG00012628 golt1b,LOC108428784,LOC107676462,LOC107701063 other downstream 5912418 514222 ~ 539591 (-)
AMCG00012751 NA other upstream 178454 6638480 ~ 6695924 (-)
AMCG00012782 NA other upstream 1431463 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 2652415 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 4280328 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 4397855 10857881 ~ 10862322 (-)

Expression


Co-expression Network