AMCG00012758


Basic Information

Item Value
gene id AMCG00012758
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 6928530 ~ 6981212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012758
ATGGATTTCGCTAGCACCTTCCTGTGGGGGACAGCAGAAAGCCTAGCGGAGAAGGAGAGGCAGCTCATGGGCATGATTAACCAATTGACCAGCCTGAGGGAGCAGCTGCTGGCGGCCCACGACGAACAGAAGAAGCTCGCTGCGTCACAGATCGAGAAGCAACGCCAACAAATGGAGCTAGCCAAGCAGCAACAGGATCAAATTGCaagacaacaacagcaactcCTGCAACAGCAGCATAAAATCAACCTTCTTCAGCAGCAGATCCAGGTTCAAGGTCAACTGCCACCATTGATGATTCCAGTATTCCCGCCAGACCAGAGGACTATagcggcagcagcagcgcaACAGGGTTTCCTCCTGCCACCAGGCTTCAACTATAAACCAGGATGCAGTGACCCTTACCCTCTTCAGCTGATTCCGACTACTATGGCAGCTGCTGCCGCGGCAACGCCAGGCCTCGGTCCTCTCCAGCTGCAGCAACTTTATGCAGCCCAGCTGGCAGCCATGCAGGTGTCTCCGGGAGCCAAACTACCCAGCATGCCTCAGACTAACTTGGGTAGCACTCACTCGCCAACTAGTGTCCAGACAGAGAAGTGCAGAAGTACCCCTCCACCTAAAACCAAGGACGAGGGCGCACAGCCACTGAACCTGTCGTCCAAGCCTAAGACAACCGAGAGCAAGTCACCCACGTCCCCCGCTTCCCCACAGGTCCCCTCGCTGAGGACGAACTCCAGCGCCATGAAACACAGCATCCAAGCCAGCATGGCCAGTCCGCCATCCAGAGTCAGTTCCATAGACATCCTCTCCTCCATCACCTCTGGCGGATACTTGAATGACCATGAGGCTGTCACCAAAGCCTTCCAGGAGGCCAGGCAAATGAAGGAGCAGCTTCGGAGAGAGCAACAAGTCCTAGATGCGAAAGTGGCCGTGGTGAACAGTCTGGGGCTGAACAATGGCAGGACAGAGAAGGAGAAAGCGGCGCTGGAGAGTCTGACACAACAGCTTGCAGCGAAGCAGACCGAGGATGGCAAATTCAACCATGCCATGATGGAGTTCAACATGAGCGGGGACTCAGATGGAAGCCCAAGCGTGTCCGATTCCAGGATGTTCCGGGAAGCCCGAGGCCGGGGGAACAGCGAGCCCCATATAAAACGCCCCATGAACGCTTTCATGGTCTGGGCAAAAGATGAGAGGAGAAAAATTCTTCAGGCTTTCCCTGACATGCATAACTCTAACATCAGCAAAATCCTTGTCGATGGAAAGAAACTGCGAATTGGGGAATACAAAGCCATCATGCGCAATCGACGTCAGGAGATGAGGCAGTACTTCACAGTTGGGCAGCAGGGCCAGATCCCCCTGACCTCTGCGGGAGTGGTGTACCCGGGCGCGATCACCATGGCCGGCCTGCCCTCGCCCCAGATCCCCTCGGAGCACTCCAGCATGTCGAGCAGCCCCGAGCCCACGATCCCCGTCATCCAGAGCACTTACTTGCACAGCATGAAGGCTGAGGAGCCGCGTGTGAAAGAGGAGATGCAGGTGGACGACGGCAACGGAGACGTGTACGACGACTTCGACTATGAGGACGAGGACGCGGACTATGGCAGCGACAGTGAGAACCACATCGCCGTGCAGGCTGACTAA

Function

GO: NA

KEGG:

id description
K09269 SOX5_6_13; transcription factor SOX5/6/13 (SOX group D)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012758 True 1644 mRNA 0.56 12 6928530 6981212

Neighbor

gene id symbol gene type direction distance location
AMCG00012757 strap,LOC106576022,LOC106609126,LOC105020178 coding downstream 104765 6815808 ~ 6823765 (-)
AMCG00012752 NA coding downstream 308772 6607194 ~ 6619758 (-)
AMCG00012745 NA coding downstream 468504 6452009 ~ 6460026 (-)
AMCG00012744 NA coding downstream 492899 6412731 ~ 6435631 (-)
AMCG00012743 NA coding downstream 550276 6362449 ~ 6378254 (-)
AMCG00012759 NA coding upstream 34893 7016105 ~ 7024518 (-)
AMCG00012760 NA coding upstream 232533 7213745 ~ 7235643 (-)
AMCG00012766 NA coding upstream 297490 7278702 ~ 7289692 (-)
AMCG00012764 NA coding upstream 340732 7321944 ~ 7333020 (-)
AMCG00012765 NA coding upstream 352533 7333745 ~ 7343454 (-)
G39561 NA non-coding downstream 30293 6897987 ~ 6898237 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding downstream 81134 6772968 ~ 6847396 (-)
G39556 NA non-coding downstream 132797 6786456 ~ 6795733 (-)
G39462 NA non-coding downstream 640595 6285455 ~ 6287935 (-)
G39443 NA non-coding downstream 659592 6268235 ~ 6268938 (-)
G39580 NA non-coding upstream 169405 7150617 ~ 7150823 (-)
G39662 NA non-coding upstream 690024 7671236 ~ 7671642 (-)
G39707 NA non-coding upstream 846066 7827278 ~ 7828147 (-)
G39839 NA non-coding upstream 1287782 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 1586840 8568052 ~ 8569889 (-)
AMCG00012751 NA other downstream 232606 6638480 ~ 6695924 (-)
G39487 NA other downstream 472352 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 864713 6052364 ~ 6063817 (-)
G38490 NA other downstream 4744367 2183885 ~ 2184163 (-)
G38458 NA other downstream 5151309 1776854 ~ 1777221 (-)
AMCG00012782 NA other upstream 910277 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 2131229 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 3759142 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 3876669 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 5259184 12240396 ~ 12271789 (-)

Expression


Co-expression Network