AMCG00012767 (parvb,LOC103134461)


Basic Information

Item Value
gene id AMCG00012767
gene name parvb,LOC103134461
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7396579 ~ 7422773 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012767
ATGTCCAACCGGAAAGAGAAGGGCAAGCCGAGCTCCGGCATCCACAGCAGCATGTCCACAACCCCGGTCCGATCGCCGACTCTGCAGCCCGGCAAGATGAAGAAGGACGAGTCGTTCCTGGGGAAGCTGGGAGGCACGCTGGTGAGGAAGAAAAAAGCCAAAGAAGAGGAAAATGCAGAGAGGACTATGCTGGACCCCACCTCCAGGGACGACTCCAAGTTTAAAGAGCTCCTCAGGGTGCTGATTGACTGGATCAACAACGAGCTGGAAGAGGAGAGAATCATTGTGAAGGACCTCGAGGAGGATGTCTACGATGGACAGGTGCTGCAGAAACTTTTTGAGAAGCTGTCGGGGCGGAAGCTGAACGTGGCCGAGGTGACTCAGTCCGAGATAGGACAGAAGCAGAAGCTCCAGACGGTTCTCGAGGCCGTGAATGAGTTGCTGCGCCCACACGGCTGGGCCCTGGACTGGAGTGTGGACGCTATCCATGGCAAGAACCTGGTGTGCATAGTCTCCCTGCTGGTTGCCCTGGCGATGCACTTCCAGGCTCCCATCCGTCTGCCTGAGCATGTGTCTGTGCAGATGGTGGTGGTCAAGAAAAGAGAGGGCATTCTTCAGACATCGCACGTGACGAAGGAGCTCACTACCACCACAGAGATGATGATGGGGAGATTTGAAAGAGATGCCTTTGACACCCTGCTGGATCACGCCCCTGACAAGCTGAATGTTGTTAAAAAGTCTCTTATCACCTTTGTGAACAAACACCTCAACAAGCTGAACCTGGAGGTAACCGAGCTGGAATCGCAGTTTGCAGATGGTGTGTATCTAGTGCTGCTGATGGGACTGCTGGAAAACTACTTTGTTCCTCTTTACAATTTCTTCCTCACCCCCGAGAACTTCGATCAGAAGGTTCATAACGTGGCATTCGCCTTTGAGCTGATGCAGGATGGAGGACTGAAAAAGCCCAAAGCTCGCCCAGAAGATGTTGTCAACCTGAATCTGAAATCCACCCTGAGGGTTCTCTACAACTTATTCACCAACTACAAGAATGTCGAGTGAAGTTCAAGTTGGCCTGAACGTGATGTCCAAAGACGGTACAAACATTTTGACAGCTGGTGTTCACGCTGGTCTGGCAAATTTGACCGAACTGCAGGGACAATAATTTGCAATGCAATGATGCAAGCTTTGTAGCTTCTCTGGTGATCTCACCCCCAACAACTTCCCcatcctacacacacacacacacacacacacacacacacgcgcgcaaAGTTTTCTCTGTCCAttcattgcaatacatttttaaaatctgaccTGATATAAATTGTTTAAGGATTGTATGCAAGAcccacaattaaacaaatgttgtaAAGGTGTATTCCCTGGGTTTGGAATGTAACCCTGACATTAGAGGAATGTATTGCACTGCAGCTTGCGTTACTTTGTTATAAATATCTCAGCTCAGATACAgtgatctgtttttgtttgcaaacAATTATAAATTAGGCATCCACTATAAAACAGCTACATTAATCACTGCTGCAGTAACATGCAGGCATTTTGTGTGGAAGTTGTACCTGATACTTTTACAGTGGTAGAGACCACTGATTAATGAAGTGCACATTGATTCGATTTTTTAATACCCGTTAGAGAATCGTTGTAGTCTTTATTTCAGGTTTTGGTCttaattttgtaatatgaaaCGGTTACTGAACTGTAACTAaaagccttttttgtttctgcaacacattgtttaatttgtaaaccGGTGTTCTCCAACAGAAGACATGGCTTTAATTGCAGTTTTTGACACTTTTACCCTTCATCTCTTTTAACCCTTGGCCAATTATTCCTTGCCTGCTTTTGAGGATCTAAGCCATGTGCCCGGCTCAGCACCTGGGTTCTTAATTAAGCCATTCTTATTAGATGTTCTCAAATGTTTCTGAATTGTTCATCCATCTGCTGCTGTTTATCCAAGTATTGACTCCTCAGTGAAGCTGGTGTCATTTTGCATTGATACAGACAGGCAACAGATTGTCCAAAAGCCTTTCTAAAGAACCATATGTACAGAGAGTGTCCATGCATGTGTGCCGGTGTTGAATTATCACTAGTCATGTTTTTGGAAGACTAGCACCTGGATattaaaagcagttttgcaGCATAGGTATTTATGAATGTGTTCTACTGTTACTTTCTTGTAATAAAATCTCTAAAAGCA

Function

symbol description
parvb Predicted to enable actin binding activity. Acts upstream of or within cell-matrix adhesion and regulation of heart contraction. Located in Z disc. Is expressed in heart and somite. Orthologous to human PARVB (parvin beta).

NR:

description
PREDICTED: beta-parvin isoform X2

GO: NA

KEGG:

id description
K06275 PARV; parvin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012767 True 2218 mRNA 0.45 13 7396579 7422773

Neighbor

gene id symbol gene type direction distance location
AMCG00012761 lyrm5a,LOC106576136,LOC107658915,LOC107725960 coding upstream 103675 7290851 ~ 7292904 (+)
AMCG00012762 NA coding upstream 116921 7247162 ~ 7279658 (+)
AMCG00012756 etnk1,LOC106609326 coding upstream 553238 6823862 ~ 6843341 (+)
AMCG00012755 NA coding upstream 600850 6783452 ~ 6795729 (+)
AMCG00012754 kras,rask,LOC103038241,LOC108428819,LOC105900436,LOC108274959 coding upstream 615761 6765079 ~ 6780818 (+)
AMCG00012768 NA coding downstream 4208 7426981 ~ 7455406 (+)
AMCG00012775 NA coding downstream 399199 7821972 ~ 7832788 (+)
AMCG00012777 NA coding downstream 439486 7862259 ~ 7864830 (+)
AMCG00012778 NA coding downstream 513607 7936380 ~ 7958975 (+)
AMCG00012786 NA coding downstream 611321 8034094 ~ 8034399 (+)
G39586 NA non-coding upstream 178120 7213745 ~ 7218459 (+)
G39560 NA non-coding upstream 498349 6897997 ~ 6898230 (+)
G39538 NA non-coding upstream 634301 6761965 ~ 6762278 (+)
G39490 LOC103376870 non-coding upstream 860186 6512648 ~ 6536393 (+)
G39445 NA non-coding upstream 1108643 6284934 ~ 6287936 (+)
G39668 NA non-coding downstream 286094 7708867 ~ 7713243 (+)
G39669 NA non-coding downstream 291724 7714497 ~ 7735268 (+)
G39737 NA non-coding downstream 483484 7906257 ~ 7909166 (+)
G39776 NA non-coding downstream 634246 8057019 ~ 8132564 (+)
G39838 NA non-coding downstream 846221 8268994 ~ 8269221 (+)
AMCG00012763 NA other upstream 15020 7344450 ~ 7381559 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 878596 6476249 ~ 6517983 (+)
AMCG00012734 NA other upstream 1339747 6053148 ~ 6056832 (+)
AMCG00012718 NA other upstream 1573064 5807846 ~ 5823515 (+)
G39297 NA other upstream 1843812 5552417 ~ 5552767 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other downstream 302715 7725488 ~ 7727828 (+)
G39709 LOC101154678 other downstream 412573 7835346 ~ 7836214 (+)
AMCG00012797 NA other downstream 913125 8335898 ~ 8345855 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other downstream 1113460 8536233 ~ 8569891 (+)
AMCG00012818 NA other downstream 1660889 9083662 ~ 9085700 (+)

Expression


Co-expression Network