AMCG00012772


Basic Information

Item Value
gene id AMCG00012772
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7702378 ~ 7719893 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012772
ATGCGGCTTTACTGTAGCAAAGATGTGAGCACTACCTGTGTAACTGTGgccatttttgttatttttgttgttgttgtcagtgTTTGGGTTTCCACGGACCATGATGACATTGAGAAGGTGGCTAAGGCCTGGGGAGCACAGGTGCATCGCAGGAGTCCTGAAGTCTCCAGGGACTCCTCCAGCTCCCTGGACACCATCCAGGAGTTTGTTCGCCTCAACCCAGTGGTGGATATCATAGGCCACATCCAGGCCACCTCGCCATGCCTGCACCCCTTCCACCTGCAGGAAGCGATGGGCATGATGACCAAGCAGGGCTATGACTCGGTCTTCTCTGTGGTGAGAAGACACAACTTCCGCTGGCAGGAGATCAAGAAAGGAGTTCCAAAAACAAAGCCCCTGAATCTTAACCCGTTCAAGAGGCCGAGAAGGCAGGACTGGGACGGAGAACTCTATGAGAACGGCTCCTTCTACTTCAACACCAGGGATCTGGTCGAGCAAGGGATGTTGCAGggTGGGAATATGATCTACTATGAAATGCTCCCAGAGTACAGTGTGGACATTGATGTTGATATTGACTGGCCAATAGCAGAACAGAGAGTTCTCagGTATGGATACTTTGGACGGGACAAGCTGGAGCAAGTAAAACTGTTTGTCACCAATTTTGACGGGTGTCTCACTGATGGAAAGCTCTACATGTCCACCACTGGGGAAGAGATCCTGTCTGTTAATGTCAAAGACACTATGGCGGTGAAGCTGCTGCAGGATAGTGGAGTCGAGGTGCTGTTCATCTCTTCTAGCGACTCCCCCGTCCAGAAACTCATTGCCAAGAAGCTGGGCTGTCAGTTGAAGCAGAAAGTAGCTAACAAACAGGAGGAGGTGCAGCGGCTCATGAAGGAGCGACAACTGTCATGGAAGGATGTGGCTTATTTTGGTAATGACAAGCCTGACGTGGATTGTCTGAATCTGGCTGGGGTGAGCGGTGTGCCCCTGGACGCCCCCTCGGTGGCAGTGAAAGCGGCGAAATATACTTGTCACTGtgcagcagggcagggggcaaTACGGGAGATGGCTGAGCACAAGTAG

Function

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function

KEGG:

id description
K21749 CMAS; N-acylneuraminate/3-deoxy-D-glycero-D-galacto-nononate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012772 True 1083 mRNA 0.52 8 7702378 7719893

Neighbor

gene id symbol gene type direction distance location
AMCG00012770 NA coding downstream 167939 7478394 ~ 7534439 (-)
AMCG00012769 NA coding downstream 311544 7387968 ~ 7390834 (-)
AMCG00012765 NA coding downstream 358924 7333745 ~ 7343454 (-)
AMCG00012764 NA coding downstream 369358 7321944 ~ 7333020 (-)
AMCG00012766 NA coding downstream 412686 7278702 ~ 7289692 (-)
AMCG00012771 kcnj8,irk8,LOC108279966,LOC106576596 coding upstream 5595 7725488 ~ 7730823 (-)
AMCG00012774 abcc9,LOC108233250 coding upstream 14938 7734831 ~ 7742031 (-)
AMCG00012773 LOC106576597 coding upstream 37184 7757077 ~ 7787652 (-)
AMCG00012776 NA coding upstream 120476 7840369 ~ 7841180 (-)
AMCG00012783 NA coding upstream 164938 7884831 ~ 7891119 (-)
G39662 NA non-coding downstream 30736 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 551555 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 804141 6897987 ~ 6898237 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding downstream 854982 6772968 ~ 6847396 (-)
G39556 NA non-coding downstream 906645 6786456 ~ 6795733 (-)
G39707 NA non-coding upstream 107385 7827278 ~ 7828147 (-)
G39839 NA non-coding upstream 549101 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 848159 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 940555 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 1180220 8900113 ~ 8901481 (-)
AMCG00012751 NA other downstream 1006454 6638480 ~ 6695924 (-)
G39487 NA other downstream 1246200 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 1638561 6052364 ~ 6063817 (-)
G38490 NA other downstream 5518215 2183885 ~ 2184163 (-)
G38458 NA other downstream 5925157 1776854 ~ 1777221 (-)
AMCG00012782 NA other upstream 171596 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 1392548 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 3020461 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 3137988 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4520503 12240396 ~ 12271789 (-)

Expression


Co-expression Network