AMCG00012773 (LOC106576597)


Basic Information

Item Value
gene id AMCG00012773
gene name LOC106576597
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7757077 ~ 7787652 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012773
GTTTCTCAGAACCCAGCTGGCATCATGAGCCTGTCATTCTGCGGCAATGACATGAACACGTCCTACAGTGTGGAGGATGGGGTGTTGAACAATGGCTGCTTTGTGGACGCCCTCAACTTGGTGCCTCATgtcttcctcctcttcatcaCTTTCCCAATTTTGTTTATCGGCTGGGGTAGCCAGAGCTCCAAAGTGCAGATCCACCACAACACCTGGCTTCACTTCCCTGGGCACAACCTGAGATGGATCCTGACCTTCATTCTGCTGTTTGTCCACGTGTGTGAGATTGCAGAGGGGGTGGTCTCCAATGGGCGAATGAATTCTCACCATCTTCATCTTTTCTTGCCTGCCTTTATGGGGTTTATAGCAGCCACTACATCTATAGTGTACTACCACAACATTGAAACCTCCAACTTCCCCAAATTACTGCTAGCTCTGTTCATTTACTGGGTGCTGGCCTTCATCACAAAGACTATCAAGCTGGTGAAGTATTATGATCTGCAGGTGGGGATAAAGCACCTCAGGTTCTGCATCACTGCCATGCTGGTGGTCCTGTACGGCCTGTTAATGGCAGTGGAGATTAATGTCATCCGGGTCAGGaagTATGTGTTTTTCACAAACCCTCAGAAGGTGAAGCCCCCCGAGGACCTGCAAGACCTTGGAGTGAGGTTCCTGCAGCCATTCGTTAACCTGTTATCCAAGGCCACGTACTGGTGGATGAACCCTCTGATCATTGGTGCCCACAAACGACCCATTGAGCTGAAGAAGATCGGGAAGCTACCAATTGCCATGAGAGCTCTTACCAACTACCTTCGTCTGAAAGATACTTATGAAGAGCAGAGGGAGGTGAATGACCCGGAGAAGACCCCCTCGATGTGGAAGTCAATGTATCGGGCATTTGGACGGCCCATCCTGCTCAGCAGCACCTTCCGCTACCTGGCTGACCTGCTGGGATTCTCCGGGCCCCTGTGCATCTTCGCCATCGTCACACGGCTCCAGAACAATGGCACCGTCGCCAACAGTACTACCAACAGTACTGACGAAGGAAAAATCTCTGGGCTGTATTACCTGTCCTCAAACGAACTCCTCCAAAATGCCTATGTCCTGGCAGTCCTGCTGTTTCTTGCCCTGATCCTGCAGAGGACATTTCTACAGGCATCTTATTATGTCACCATAGAAACTGGCATCAACCTCCGGGGAGCATTACTGGCCATGATCTACAACAAGATCCTGCGACTCTCCACCTCTAACATGTCCATGGGCGAGATGACCCTGGGCCAGATCAACAACCTTGTGGCCATCGAGACCAACCAGCTCATGTGGTTCTTGTTCCTGTGCCCAAACCTCTGGGCCATGCCTGTGCAGATCATCATGGGGGTGATCCTACTGTATTACCTGCTGAACATCAGCGCTCTCATAGGTGCCTCAGTCATTGTGATTCTGGCCCCAATGCAGTACTTCATAGCCACCAAGCTCGCTGATGCCCAGAAGAGCACATTGGACTACTCCACGGACAGGCTGAAGAAAACCAGCGAGATCCTGAAGGGGATCAAGCTGTTGAAGCTGTACGCCTGGGAGAACATCTTCTGCGCCAGTGTAGAGGAGACTAGGAGGAAGGAGCTCACCAGCCTCAAAACCTTCGCACTCTACACCTCCTTGTCCAtttttatgaaTACTGCCATCCCCATTGCAGCAGTGCTAGCGACATTCGTAGCCCATGCCAACCTTAGCGAAGCCCCACTGAGTGCCGCTACTGCCTTCGCCTCGCTGGCGCTGTTCCACATCCTGGTCACCCCGCTCTTCTTGCTGTCCACGGTGGTCAGGTTCGCAGTCAAGGCCTTGGTCAGCGTGCAGAAACTGGGAGAGTTCCTCCAGAGTGACGAGATTGGTGATGACAGTTGGAGGAATGGGGAAATGCCGGTGCCATTGGAGTCATGTAAGAAGCACCCCGGAGCGACCAAGGCTATAAACAGGAAGCAGCCCCTGAGATATCAGCTGGAGGGATACGAGCAGCCGGTGCGAAGACAACTGCGGCCCATGGAGACCGAAGACATCGCAGTCAAGGTGACTAATGGGTACTTCACTTGGGGAAGCAACTTGTCAACATTATCGGATGTTAACATCCGAATTCCCACAGGGCAGCTCATTATGATTGTGGGGCAAGTGGGCTGTGGAAAGTCCTCCCTCCTGCTGGCCATGCTTGGGGAGATGCAGACGATCAAAGGAAAAGTTTTCTGGAGCAACATACATGAGACAGAGCCGTCTTTCGAAGCCATCCGGAGTAAAAACAGGAACTCGGTGGCATACGCGGCCCAGAAGTCCTGGCTGCTTAATGCCACAGTGGAAGAGAACATCACATTTGGGAGCCCCTTCACCAAACAGAGGTATAAGGCAGTTATAGATGCCTGCTCCCTACAGCCTGACATTGACCTGCTGCCGTTTGGGGACCAGACTGAAATTGGGGAGAGGGGGATCAATCTGAGTGGGGGACAGAGGCAGCGAATCTGTGTGGCTCGTGCTCTCTACCAGAACACCAATATCGTCTTTCTGGACGACCCATTCTCAGCCCTGGACATCCACTTGAGTGACCACCTTATGCAGGAGGGAATACTGAAGTTCCTTCAGGACGACAAGAGGACTGTGGTATTGATCATTGCTATGAAGGATGGCACAGTGCTCAGGGAAGGGACGCTGAAGGATATCCAGAACAATGATGTCGAGCTGTACGAACACTGGAAGTCTCTAATGAACCGGCAGGACCAAGAACTAGAGAAGGACACTGAATCTGATAGCCTAACAgccattgaaagaaaaaatctgaGAAGAGCCCTGTATTCCAGAGAAGCCAAGTCCCAGattgatgatgaagatgaagaagaggaggaggaagaagacgACGAAGACACCCAGTCAACCATCACCAGCCGCCGGTCTAAGATCCCCTGGAAGGTATGCTGGAAGTACCTGACCTCGGGTGGTTTTGTTCTGCTCTTCATGATGATCTTCTCCAAGCTCCTGAAGCACTCTGTCATCGTGGCCATTGACTACTGGCTGGCCTCCTGGACCTCCAACCTGACCACCACAAACTTTACAAAAGGTAGTGAGGCCACCAAGTCAGAGAGCAAGGCAAGTGTTGTGGTGTTCAGTATTCTGTGCAGTGCAGGGATTGCCCTCTGTCTCATCACCTCCCTGACAGTTGAGTGGATGGGCCTATCAGCTGCCACCAACCTTCACCACAACCTCCTCAACAAGATCATCCTTGCCCCCATCAGattttttgatGTCACGCCCCTTGGACAAATCCTAAACCGTTTCTCAGCAGACACGAACATTATTGATCAGCACATCCCCACAACTCTGGAGTCTCTGACACGCTCCACGCTGCTCTGCCTCAGTGCCATCGGGGTCATCTCCTTTGTCACCCACACCTTCCTTATCGCCATGGTGCCCCTCACCGTTGCCTTCTACTTTATTCAGAAGTACTTCCGGGTCGCCTCCAAAGACCTTCAGGACCTGGATGATTCCACCCAGCTGCCGTTACTGTGCCACTTCTCAGAGACAGCCGAGGGTCTGACCACCATCCGGGCATTCAGGCACGAGGCTCGCTTCAAGCAACGAATGCTGGAGCTAACAGACACCAACAACACGGCCTACTTGTTTCTATCGGCTGCCAACAGGTGGCTGGAGGTCAGGACGGATTACCTCGGGGCCGTGATTGTCCTGACTGCAGCTGTGGCTTCCATATGCAGCTCAGAAGTTCTCCAATCAGGGCTGGTAGGCCTTGGCCTGACATATGCCCTTACTGTAAGTACACAGATCTGA

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family C member 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012773 True 3822 mRNA 0.52 30 7757077 7787652

Neighbor

gene id symbol gene type direction distance location
AMCG00012774 abcc9,LOC108233250 coding downstream 15046 7734831 ~ 7742031 (-)
AMCG00012771 kcnj8,irk8,LOC108279966,LOC106576596 coding downstream 26254 7725488 ~ 7730823 (-)
AMCG00012772 NA coding downstream 37184 7702378 ~ 7719893 (-)
AMCG00012770 NA coding downstream 222638 7478394 ~ 7534439 (-)
AMCG00012769 NA coding downstream 366243 7387968 ~ 7390834 (-)
AMCG00012776 NA coding upstream 52717 7840369 ~ 7841180 (-)
AMCG00012783 NA coding upstream 97179 7884831 ~ 7891119 (-)
AMCG00012781 NA coding upstream 120483 7908135 ~ 7928050 (-)
AMCG00012780 ttll1 coding upstream 150830 7938482 ~ 7951629 (-)
AMCG00012779 NA coding upstream 168094 7955746 ~ 7960641 (-)
G39662 NA non-coding downstream 85435 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 606254 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 858840 6897987 ~ 6898237 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding downstream 909681 6772968 ~ 6847396 (-)
G39707 NA non-coding upstream 39626 7827278 ~ 7828147 (-)
G39839 NA non-coding upstream 481342 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 780400 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 872796 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 1112461 8900113 ~ 8901481 (-)
AMCG00012751 NA other downstream 1061153 6638480 ~ 6695924 (-)
G39487 NA other downstream 1300899 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 1693260 6052364 ~ 6063817 (-)
G38490 NA other downstream 5572914 2183885 ~ 2184163 (-)
G38458 NA other downstream 5979856 1776854 ~ 1777221 (-)
AMCG00012782 NA other upstream 103837 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 1324789 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2952702 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 3070229 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4452744 12240396 ~ 12271789 (-)

Expression


Co-expression Network