AMCG00012774 (abcc9,LOC108233250)


Basic Information

Item Value
gene id AMCG00012774
gene name abcc9,LOC108233250
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7734831 ~ 7742031 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012774
AAGATCATCATCGATGGCATTGACATCTCCAAGCTGCCTCTGCACACACTGCGCTCCAGGCTGTCCATCATTCTGCAGGACCCTGTGCTGTTCAGTGGTTCCATTCGACTCTGGGAGGCCCTGGAGATAGCCCAGTTGAAGAACATGGTCAAGTCGCTGCCTGGAGGACTGGATGCAGTGGTGACGGAGGGGGGCGAGAACTTCAGTGTCGGCCAGAGGCAGCTCTTCTGTCTGGCCAGAGCTTTCGTGCGCAAGAGCAGCATACTCATAATGGATGAGGCCACCGCCTCCATTGACATGGCAACGgagAATATTTTGCAAAAGGTCGTGATGACAGCCTTCTCAAACCGCACAGTCGTCACGATCGCTCACCGAGTCCACACCATCCTGACTGCTGACCTGGTGATCGTGATGAAGCGGGGGAACATCCTGGAGTACGACAAGCCTGAAACTCTACTGGAGGACGAGGATGGCATGTTCGCTTCCTTCGTCAGAGCCGACATG

Function

symbol description
abcc9 Enables ATP-activated inward rectifier potassium channel activity. Acts upstream of or within regulation of heart contraction. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in heart. Used to study hypertrichotic osteochondrodysplasia Cantu type. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; dilated cardiomyopathy 1O; familial atrial fibrillation; and hypertrichotic osteochondrodysplasia Cantu type. Orthologous to human ABCC9 (ATP binding cassette subfamily C member 9).

NR:

description
PREDICTED: ATP-binding cassette sub-family C member 9 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012774 True 504 mRNA 0.55 5 7734831 7742031

Neighbor

gene id symbol gene type direction distance location
AMCG00012771 kcnj8,irk8,LOC108279966,LOC106576596 coding downstream 4008 7725488 ~ 7730823 (-)
AMCG00012772 NA coding downstream 14938 7702378 ~ 7719893 (-)
AMCG00012770 NA coding downstream 200392 7478394 ~ 7534439 (-)
AMCG00012769 NA coding downstream 343997 7387968 ~ 7390834 (-)
AMCG00012765 NA coding downstream 391377 7333745 ~ 7343454 (-)
AMCG00012773 LOC106576597 coding upstream 15046 7757077 ~ 7787652 (-)
AMCG00012776 NA coding upstream 98338 7840369 ~ 7841180 (-)
AMCG00012783 NA coding upstream 142800 7884831 ~ 7891119 (-)
AMCG00012781 NA coding upstream 166104 7908135 ~ 7928050 (-)
AMCG00012780 ttll1 coding upstream 196451 7938482 ~ 7951629 (-)
G39662 NA non-coding downstream 63189 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 584008 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 836594 6897987 ~ 6898237 (-)
G39546 kras,LOC103038241,LOC105900436,LOC107675271,LOC107675456 non-coding downstream 887435 6772968 ~ 6847396 (-)
G39707 NA non-coding upstream 85247 7827278 ~ 7828147 (-)
G39839 NA non-coding upstream 526963 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 826021 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 918417 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 1158082 8900113 ~ 8901481 (-)
AMCG00012751 NA other downstream 1038907 6638480 ~ 6695924 (-)
G39487 NA other downstream 1278653 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 1671014 6052364 ~ 6063817 (-)
G38490 NA other downstream 5550668 2183885 ~ 2184163 (-)
G38458 NA other downstream 5957610 1776854 ~ 1777221 (-)
AMCG00012782 NA other upstream 149458 7891489 ~ 7904455 (-)
AMCG00012829 NA other upstream 1370410 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2998323 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 3115850 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4498365 12240396 ~ 12271789 (-)

Expression


Co-expression Network