AMCG00012779


Basic Information

Item Value
gene id AMCG00012779
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7955746 ~ 7960641 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012779
CTCTGTCTGAAGTTTGGCTCTACACCGTAGATATCAATGGTCTTTACGCCTTCTAAATGCAGTCCGCGCATGCGTGAGATAAATCAAAATGGCCGCGTCCTTTGACTGTCTCATGGATTATATTTGCTTTAGGAAAGAGAAAGTAAACCTATAACTTCTTGAAAGATCGAATACTGTTGTAATGTGCGGAGGGTATTAGCGTGGTTTAAGTTTCAACTAGAAATCATTAAAGCTCGGCTGCTCCACCagctgtatttatattgtatggGATTCATGTTTTGTTGATCATCATGCTTAATAATCTATCTGGAGAAGTGGTGTGTATTTAACGACGATTTTGTTCACTGACATTTTTGCCATTCTGCCAAGTGTGCTACAGCAACACCTGCAGACATGAGGCGGTGCAGGACTCTTCTGTGGAAGACAACACAGGGGGCTGTGAGCAGACACTCGTCGTTGTCGACAGTTTCGTGCAGAAAGGGATCAAGCGCCTCAAACGTCTCGACACACCGCGCCGACCCGCCGTCATCTCCTCCCGCCGTGGAGCGGCTGCTGGACGCGGGGGACGCGCTGTGCGGGCAGGCGAGGCAGAAACCCAGCGAGGCGTCGGTGCTCCTGTTCCCGGGACAGGGGAGCCAGTTTGTGGGCATGGGCCGAGGACTTACAAAGTATGACAGCGTCAAACAGATGTTCAGCGTGGCGGAACAAATACTCGGTTACGATTTGTTGTCCATGTGCTTGAACGGCCCCGAAGGAGAGCTGCAGAAAACCGTGCACTGCCAGCCCGCGGTGTTCGTCACCTCGCTGGCTGCGGTGGAGAGACTGAACCACGAAGCACCTGCAGCCTTGGAGAAATGCGTTGCAGCCGCTGGATTCAGTGTTGGAGAATTTGCAGCCTTGGTCTTCGCAGGATCTTTGGATTTTGCAGAAGCTCTGTATGCAGTAAAAGTGCGAGCAGAAGCGATGCAAGCAGCTTCCGAAAGAGTGCCAAGTGGGATGCTGTCAGTACTCGGGAGGCCAGAAGCGAAATACAGCTACGCTTGTCAGCAGGCCAGAGACCACTGTGAGGCTGCTGGGCTGGAGAACCCAGTGTGCTCTGTCGCCAGTTACCTGTTCCCAGATGGCAGAGTAATAGCAGGGCATCTACAGGCGCTGGAATTTTTGCAGAAGAATTCAAGGAAGTTGAATTTTCTGCGGACAACAATGTTGCCGGTAAGCGGTGCGTTCCACAGCACTCTGATGGATGAGGCAGTCGAGCCCCTGAGAGAAGTCTTAAACAAAGTGGAAATCAGGAAGCCGGAGATATCTGTTCACTCCAATGTGGATGCTAAGAAGTACATGCACAGTGGACATATTAAGCGATTGTTGCTGAAACAGCTAGTGTCCCCGGTCAAATGGGAACAGACCTTGCATGCCATTTATGAGCGAAAACAAGGCGTCGATTTCCCAGAGACTTACGAAGTGGGACCAGGGAAACATCTTGGATCAACactgaaaaaatgcaatttaaaagcaTGGAGGGCCTACAGCCATATTGATGTGATCCAAGGCTAGTTTTATACCATAATCATCTGCAGTTTTAGAGCAAGACAGGACCCTTGTGGAAGACTTTTATAATGTTTGACaatgttaaaattatgtttaacaGTGTTTAATAGAATGTGGTTATTGTTTTGAAATCAGATAAATGACATGGGTTTCATTATGCACCACTTTGTGTTTACTATGAAACGTCAGGACCAGATTGCCTGCAAACTATAAACACAAGGGTATGCTAAACCTGTTTCTGGTAAATATCTAGATGCTGTCCATGAGGAAGTGTATCCACCTCTGAACAAAATGGTTTAGAGAGTCTCTGATCAAAGCAGCAACATCAAACACACTACAGTGCACAAACACTGGTTTAAGGAATACAACACAATAGCATTTTGTATTGATGCGCATGAAAagggagaaatacattttttatcattCATAGTATACCACTGGAgagttgttattttcttttataacaCTGATGAGATGTTAAACACTCAAAAGTAACAGGCCAGAACATTCAGATGAAAACATTACCTTCAATCTAATGGCCACCAAGTCAAGAATCAGtctgagaaatgcattttgtttttccaaaatgtatttattaatttatataaaattccATTTTACAGTGAAGAAGGAAAGCCTGCTTTCTTTTTGAGTTTTGCCACAACAGAGACACCTTAAACAAGTCCAAACAagatagatttatatatatataaaaaaaaatcatttggCCGGTTAACCAGTAacagacatttatataaaaagacTGTTAACCTGTAGCAGCCTTTCTGCTATTAGTCATCTTTTTGTAAAAATTTTGAAAAGTGACCCAGCACTTGAATTTCAATACAtccaaaggaaaataaaaagaaccaagtaaaaattaaataactgtaatgatacaacaacaacaaaaaaaacaatcaaccCCTTGCTAATATTGCAATTCCAAAACCTTTTGGTCAAAGACCAGCTTGTGACCTTCAGTGCAATTGTTAGCTCATTGCCCTCCTAGAAATCAATACAGATCGCAGCAGCAAGCAACATTATAACGAGAATCCCTGCAGTCCACTTGGAATAAGCGTTCACAGGATAAAAGTTGGCAACCTGAGCAAAGATGAGAAATGGAGAGATACATATCTGCTCattagaattaattaaaatgcatattccTCTTGTACATCAGATGACTAGAGGGCAGAAGAAAGTGTTCACATACAGTATTGCcaattattttacagtgctGAGGAAATGTGTTCCCAGCTTAAATGAAACTggatttcataaaacattaactcTGTCAAGATGATATAACCTCTTACCAGCCTTCCCCATCCTCTGCATCTTGAGGCTACTGGAGCCAGGAACCTTTTAATCACTCCAAATAGGGTTGTAAGGCCTAAATGGAAACTGGGGGGTGTTCTAAAATAAGATACATAAGGAAACATTCATACTGGTTATTAAGAACTTTTGTGTTAGAAACCTCATATAATAGTAAACCCCATAACTAAATTCTTTATTAATGGTTGTAAAAATAGCATGCTAAGGTCCTAAGCTGGTGATGGATTTATATGAGTAAAGGTGGCAGTTCATACATTTGTTAGTTACTGTATCTACTCACACAGAATTGTTCGTAAGAAGCCTCAATACAGTAGGAATTTGAAAAACTGCAACATTTCATGAATTGAACTAAGATTGCTGATCTTATTCTTGACTAAATTTACCAGCTGGAGAAAATCAGGCCCAGAAACATCAGTATTAGTTAGTAAGCACTTTAATAAGCCCCACCCTTTTAATTCACCGAGAAGGCTTTGCAATTATGGTCATAGATTTACTTGAGTTGTAGTGACATAACTGCCCATGACTcatttagcatttaaaatgaaactttacCTGGCAAAAAAAATCCTCTGGGGCTCTTGAACACGTGCAGCTGTGTGCACAGGGCGCAACAGAATACTTTGGAAGCCTTCGCTGTAATGCTGACTGATCTCATCTCCTATTTCTGCTAGTTGCCGTCCTATGCGTTGAGCAGcactgtgaaattaaaaaaaacaaaaacaacaagtacAAAATAGCTCTTAAGTACTAGTATTGCCAAAAAGAACTGATCACACAGTGTGAATCCTGTTTCAAATCTAAGGCTGAGATAGGTGATAGGTGGCTTACCAGAAACATGGATTTCAGCACAGtaaatcacaaaacatttattttttatttattgcacattttgtgTTGTGAAAGAATACTGTTTAAGCTTGTTGTCCATGGAAATGAGCCATAAGTGATTGTCTATTCTGTACTGATGGAGTATAAAGCTGGAAATTGGTTTCCccctcacaatttaaaaaaatgttaataactgCATTgaggtgtgtttgttttcagggaACACATTACAGGAAACTTATATTAagattttgttattcatttagGTGAGGGATGTTGCATTAACATCAATGCACATAAActgataataaaat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00645 fabD, MCAT, MCT1; [acyl-carrier-protein] S-malonyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012779 True 4028 mRNA 0.41 4 7955746 7960641

Neighbor

gene id symbol gene type direction distance location
AMCG00012780 ttll1 coding downstream 4117 7938482 ~ 7951629 (-)
AMCG00012781 NA coding downstream 27696 7908135 ~ 7928050 (-)
AMCG00012783 NA coding downstream 64627 7884831 ~ 7891119 (-)
AMCG00012776 NA coding downstream 114566 7840369 ~ 7841180 (-)
AMCG00012773 LOC106576597 coding downstream 168094 7757077 ~ 7787652 (-)
AMCG00012784 NA coding upstream 406 7961047 ~ 7975857 (-)
AMCG00012792 NA coding upstream 117179 8077820 ~ 8087653 (-)
AMCG00012791 ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 coding upstream 128584 8089225 ~ 8093252 (-)
AMCG00012789 kxd1 coding upstream 132785 8093426 ~ 8113586 (-)
AMCG00012788 tmtc1,LOC102198433 coding upstream 171790 8132431 ~ 8159884 (-)
G39707 NA non-coding downstream 127599 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 284104 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 804923 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1057509 6897987 ~ 6898237 (-)
G39556 NA non-coding downstream 1160013 6786456 ~ 6795733 (-)
G39839 NA non-coding upstream 308353 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 607411 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 699807 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 939472 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 1123019 9083660 ~ 9085793 (-)
AMCG00012782 NA other downstream 51291 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1259822 6638480 ~ 6695924 (-)
G39487 NA other downstream 1499568 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 1891929 6052364 ~ 6063817 (-)
G38490 NA other downstream 5771583 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 1151800 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2779713 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2897240 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4279755 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4935879 12896520 ~ 12906333 (-)

Expression


Co-expression Network