AMCG00012780 (ttll1)


Basic Information

Item Value
gene id AMCG00012780
gene name ttll1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7938482 ~ 7951629 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012780
CGGCGGTGTGCCTCGCTCTTCCCTCGGATCTGCGCCCAGCGATGGCTCGGACTGGATCAATCAGTGCGGACCACAGAAAGCACACACCCTTGGCCAAGAAACAGTGAAATACCACGTTTACACGACAAGATGACAGATCGTGCACCGCTCTTGGGATGAACAGCTGCTTTTATGAAACGCAATACCTCTGGATgaaaatcacaggctgttctcTGACAGGGATAACTACAGCGTTCAATGACCGCTGTCCAGTAATTACACAGCTGCACCATCAAGGAACGGCTTCTGGCAGGATCATGGCTGGCAAAGTGAAATGGGTAACTGACATAGAGAAGTCAGTGCTCATTAACAACTTTGAAAAGAGAGGATGGATTCAAGTCTCTGAAAGTGAGGACTGGAACTTCTACTGGATGAGTGTCCAGACCATAAGGAACGTCTTCAGCGTGGATAATGGCTATCGGCTTTCTGACGACCAGATTGTCAATCATTTCCCGAACCACTACGAGCTAACCAGAAAAGACCTGATGattaaaaatatcaagaggTACAGAAAGGATCTGGAAAAGGAGGGAAGCCCGCTAGGTGAAAAGGATGAAAATggcaaatatgtttatttagATTTTGTGCCCGTGACTTTCATGCTGCCTGCTGACTACAACCTGTTTGTAGAGGAGTTTAGGAAAAATCCTTCCAGTACTTGGATCATGAAGCCCTGTGGGAAAGCCCAGGGAAAGGGCATATTTCTCATCAACAAACTCTCTCAGATCAAGAAATGGTCGAGAGACAGCAGAACATCCACGTTTGTAGCGGCATCTAGTGGCAAAGAAGCATATGTAATTTCTCTTTACATTGATAACCCTTTGCTAATCGGAGGAAGGAAATTCGACTTGCGTTTGTATGTGCTAGTGACCACTTATCGCCCACTGAAGTGTTATatgtatAAACTGGGATTTTGCCGTTTTTGTACAGTCAAATACACTCCAAGTACCAGTGAATTGGATAATATGTTTGTGCACCTTACTAATGTAGCGATACAGAAACATGGGGATGATTATAACCACATCCATGGAGGCAAGTGGACTGTAAGCAACTTGCGCCTGTATTTGGAGAGCACGCGTGGGAAAGAGGTGACCAGCAAGCTGTTTGATGAAATCCACTGGATTATGGTGCAGTCACTCAAAGCTGTGGCACCTGTAATGAATAATGATAAACACTGCTTTGAATGCTATGGTTATGACATCATTATTGACGATAAACTCAAGCCCTGGCTTATTGAGGTAAATGCTTCCCCATCACTCACATCAAGTACAGCCAATGACCGAATATTGAAGTACAACTTGATGAATGACACTCTTAACATCGTCACTCCAAACGGGGAGATCCCAGACTGCCGATGGAACCGGAGTCCACAGACAGATGTACTTGGAAACTATGAAATATTGTATGATGAGGAGCTGGCGCAGAGCGAGAACGCAGACCGGGACCTCAGAAGTCGCTCTGGACAGTCTGTGGGATCAAAAGGTGGAAGAGCAAACAGCTTGAGACCAATGCTGGCTACATGGAAATGATTTATTCCTGTAACGCAAAATGCATCGGTACTTGCCAGTTCTCTGGTGAAGAGTAGGGAAAAAAATTGCAGCAGCCCCCGAAATGAAGGATATTACCTGACCTACCCCTCTGTCCCGTCCCAGAACTGTGTTGAGAACAGTTTGTTCTTGCTACAGCACAAAAGCAAATAGATTCTCACAGCCTGAAAACACAGTTCGTTATTAGCAGTATGATTGCATGTTGAGCATGGAGTACTGATCCCAGTCATTACTGTCTTGCATTACATTGGGTGTAACCTGcagagacatttttaaatgtgtgtcagTGGAATAGCAttgaatactgttttttttttttttttttttt

Function

symbol description
ttll1 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be located in cytoplasm and microtubule. Predicted to be active in cilium. Orthologous to human TTLL1 (tubulin tyrosine ligase like 1).

NR:

description
PREDICTED: probable tubulin polyglutamylase TTLL1

GO: NA

KEGG:

id description
K16599 TTLL1; tubulin polyglutamylase TTLL1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012780 True 1914 mRNA 0.44 10 7938482 7951629

Neighbor

gene id symbol gene type direction distance location
AMCG00012781 NA coding downstream 10432 7908135 ~ 7928050 (-)
AMCG00012783 NA coding downstream 47363 7884831 ~ 7891119 (-)
AMCG00012776 NA coding downstream 97302 7840369 ~ 7841180 (-)
AMCG00012773 LOC106576597 coding downstream 150830 7757077 ~ 7787652 (-)
AMCG00012774 abcc9,LOC108233250 coding downstream 196451 7734831 ~ 7742031 (-)
AMCG00012779 NA coding upstream 4117 7955746 ~ 7960641 (-)
AMCG00012784 NA coding upstream 9418 7961047 ~ 7975857 (-)
AMCG00012792 NA coding upstream 126191 8077820 ~ 8087653 (-)
AMCG00012791 ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 coding upstream 137596 8089225 ~ 8093252 (-)
AMCG00012789 kxd1 coding upstream 141797 8093426 ~ 8113586 (-)
G39707 NA non-coding downstream 110335 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 266840 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 787659 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1040245 6897987 ~ 6898237 (-)
G39556 NA non-coding downstream 1142749 6786456 ~ 6795733 (-)
G39839 NA non-coding upstream 317365 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 616423 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 708819 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 948484 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 1132031 9083660 ~ 9085793 (-)
AMCG00012782 NA other downstream 34027 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1242558 6638480 ~ 6695924 (-)
G39487 NA other downstream 1482304 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 1874665 6052364 ~ 6063817 (-)
G38490 NA other downstream 5754319 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 1160812 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2788725 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2906252 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4288767 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4944891 12896520 ~ 12906333 (-)

Expression


Co-expression Network