AMCG00012781


Basic Information

Item Value
gene id AMCG00012781
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7908135 ~ 7928050 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012781
CACTGATACCAagatttaaaacactgcagatGTGTGGTTTTGGTGCTCTCCATCCTGGGAACTGGGGAATcttgtgtattttctgttttgtttttggatggGGGAAATTGTAAACCAGGCAAATTTCAGTGacataatgcattttcataACAACAACGAATGCCAAATCGAGCAACGCTCCTGTGCAGCAAAATTCCCGCCCGTACTCtgagggcagcagtgtggagaagTGGTGTGGGATCTGAACTCCTCTGGATCTCAGCATCAGAAGATCCCTGAACTTGGAGGGAATAGGCTTCAACTCCCAACAATGTCGGACTCTTACGATGGATCTATGACCGATGTCTCCAGTGACAGCTTCTGGGAGGTCGGTAACTATAAACGCACAGTGAAACGCATAGACGATGGGAACCGACTTTGCAACGACCTTATGAACTGCATCCACGAGCGAGCGCGGATAGAGAAGGCCTACGCTCAGCAGCTGACTGACTGGGGCAAGCGCTGGCGGCAGTTTATTGAGAAAGGGCCTCAGTATGGCACACTGGAAAGAGCGTGGACGGCACTCATGACGGAGGCGGAGAAGGTCAGTGACCTGCACATGGAGGTGAAAGGGGCTCTGATGGCTGAAGACTTCGAAAAAGTCAAGAATTGGCAGAAGGATGCCTATCACAAACAAATGATTGGAGGGTTCAAGGAAACAAAAGAAGCAGAAGACGGATTCCGCAAAGCCCAGAAGCCCTGGGCAAAGAAACTCAAAGAGGTAGAAACTACTAAGAAAGCATATCACGCAGCCTGCAAAGAAGAAAAGCTGGCAACAACAAGGGAAAACACCAGCAAACTGGATCCAAACATGAACCCCGAGACACTGAAGAAACTGCAGGACAAAGTGGAAAAGAGCAGGCAGGAAATGCAGAAGACAAGGGAAAAGTACGAGAAGTCTCTGGAGGAGCTGGATAAGTGCACGCCTCAGTACATGGAGAATATGGAGCAGGTGTTTGAGCAGTGCCAGGAGTTTGAGGACAAGAGGATTCGTTTCTTCGGTGATCTGCTGCTGGATGTGAAGAAGCACCTGGACCTCTCAACCAAACCCGCCTATGCCACAGTTTATCAGAACCTAGAAGACACTATTAAAGGTGCTGACGCTGAAGAGGACTTAAAATGGTTCAGGTCCAATCACGGTCCTGGAATGTCGATGTGCTGGCCGCAGTTTGAGAATTTTGAGCTGCCACAGAATAAGAGATGGTCCATAGTAGACTGGTCGATGGACCTGAACCGCACTCTCAGCAGGCGAGATAAGAAGAGGCCTGGGGACGGAGTGACGCTGACGGGGATCAGCCAGGCCAGGGAGCAAGCCGCCCCGCCTGCCAAGAACAACAGCAGTGTGCTGAATAGCACTGAACAGTCCGGCTCAAACCCCtttgaagaggaggaggaagaggatgaaCAGGAGCAGGAGGTGaaggaagaacaaaaaagcAGCCCTGTCAGTGAAAAAAAAGAGGAACCCAACCTGATGCCCATTCGACTGAACAAGGGTTGCAAAACGCATGTGAGCAGTGGAGAGAAAACTCAAGACTGGTCAGATGAGGAGTCTGGAAACCCCTTTTCCGCCACCGACACCAACGGCAATGGCAATCCCTTTGAGGAGGAGTCCTCCCCAGGCATCGAGGTCCCAGTCAAGGCCTTGTACGACTACGAGGGGCAAGAGCACGATGAGCTCAGCTTCAAAGCAGGTGATGAGATGACCAAGATAGGAAACGAGGACGAACAAGGATGGTGTAAGGGACGCCTGAAGGACGGCACGGTTGGCCTGTACCCAGCGAACTACGTGGAAGCAATCCAGTAAcagaaagcaaatattttaaagatatccTGTATTATTTAGCCTCCTGTTAATCTTCCCAGGGCAGAGGTGGAACAGTGAACTATGTGCAGACTGAGTACCGAAGACTGCACTCATTTCGGTCAGATCTTTCAGAGGTGCTACAACAGAATGTTGGGAGAAAATGTCTAATCAAGGTTTAACattgaatacaatataaaagcAGAAGAAACGTATTgaccaaaaacaagaaaaagaaaagaaacaatggtGAAAGGACATGGATTAAACTTTACTGTAATCCGATCAATGACAATAATCCACAATAAAGAGGTAGGATCTAGTTGTGACCATGAGCACAGAGCCTGATATTTGCCTTCATATGCTGGGCcttgtaaatatgattttatgatTGAAATAACTTTTTCTCTCAATGCACTATGTTACTAGATTAGTGCACCATGTAGAACTGTTTTGAAGTACAAAGAGGGTCATCTACTTTTGAGGTCATTATTGGAATCAATTATTCCACTGGCAAATCCATCCGAGTTAAGCTTTTTTCTGAATCGGCTCCAGCGTGTTTGGGGTTGTGAGAAGGACATCATAAGGTCAGTTGTCAGTATAGTTTTAAAccgttacatttttaatttgtagggATTGTGATTATAGTTGTTTCTATTCCTTTCTGGTAGTAGTCTTCACCATGTACAGGATTCCAGTGACAGTGTATATACACTTCCTGTACAGATTGATTGTAGATGTTTGGACTGCATTCTTTTAACAATGGAGTCTGGTGTGGGTTGTATAGTATTTGGAATTGATTCAAtgttaatcttatttttttttaaagactttgcTAATCTCTTACTGTCCTGTGCAGACAAATAATGGCTCTGTTTctcataataatatattcctgggatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K20123 PACSIN; protein kinase C and casein kinase substrate in neurons protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012781 True 2764 mRNA 0.46 14 7908135 7928050

Neighbor

gene id symbol gene type direction distance location
AMCG00012783 NA coding downstream 17016 7884831 ~ 7891119 (-)
AMCG00012776 NA coding downstream 66955 7840369 ~ 7841180 (-)
AMCG00012773 LOC106576597 coding downstream 120483 7757077 ~ 7787652 (-)
AMCG00012774 abcc9,LOC108233250 coding downstream 166104 7734831 ~ 7742031 (-)
AMCG00012771 kcnj8,irk8,LOC108279966,LOC106576596 coding downstream 177312 7725488 ~ 7730823 (-)
AMCG00012780 ttll1 coding upstream 10432 7938482 ~ 7951629 (-)
AMCG00012779 NA coding upstream 27696 7955746 ~ 7960641 (-)
AMCG00012784 NA coding upstream 32997 7961047 ~ 7975857 (-)
AMCG00012792 NA coding upstream 149770 8077820 ~ 8087653 (-)
AMCG00012791 ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 coding upstream 161175 8089225 ~ 8093252 (-)
G39707 NA non-coding downstream 79988 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 236493 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 757312 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1009898 6897987 ~ 6898237 (-)
G39556 NA non-coding downstream 1112402 6786456 ~ 6795733 (-)
G39839 NA non-coding upstream 340944 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 640002 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 732398 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 972063 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 1155610 9083660 ~ 9085793 (-)
AMCG00012782 NA other downstream 3680 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1212211 6638480 ~ 6695924 (-)
G39487 NA other downstream 1451957 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 1844318 6052364 ~ 6063817 (-)
G38490 NA other downstream 5723972 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 1184391 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2812304 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2929831 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4312346 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4968470 12896520 ~ 12906333 (-)

Expression


Co-expression Network