AMCG00012784


Basic Information

Item Value
gene id AMCG00012784
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 7961047 ~ 7975857 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012784
CTGTGACATACCTCACTCAGTCATTGCCTCAGCTGAGTGGAGTATGTGGCAGAAAGCAGTAAGATGGATTTCAAAGCAGAACTCCTTAAATCTATCTGGTATGCCTTTACATCCCTGGATGTGGAGAAAAGTGGAAAGGTGTCCAAATCCCAATTAAagGTTTTGTCTCACAATCTGTACACAGCCCTGAAAATCCCCCATGATCCTGTAGCCCTGGAGGAGCACTTTCGGGATGACGATGACGGCCCAGTGTCCAATCAGGGATACATGCCATACCTCAACAAATACATACTGGCAAAGGCCAAAGAGGGCACCTTTGACAAGGAGACGTTTGATGACCTGTGCTGGATGATGACATCGAAAAAGAACTTCAACGCAGGAAAAGTGGGCATCTGCTCTCAAAGAGACTGCTTCAAACTCTTCTGTCTCTTTAACATTTTGTCAGAGGACAGATATCCCCTCGTCATGATCCCAGAGGAGGTGGAGTATCTGATGAAGAAAATCACTGGGGCTATGAGCATGGAGTGGAACTGCAAGGAGCTGGACGACTTATACTCCCAGAACATCAAGCTGAAAGACGGAATGTCAGTGTGGATCTTCCTGGAACAGATGAATTCTGGGAATCTGCTGAACATCACCAACATCGAGTCTTTCAGTCTGGCGTTAGATGACGTCTTCCAGGAAATGTACCACAACGTGTTGAAGAAGggCTACATGTGGAAGAAAGGCCACATGCGCAGGAACTGGAACGAGCGCTGGTTCGTGCTGAAGCCTGCCATCATCCTGTACTATGTCAGCGAAGACCTGAAAGATAAGAAGGGAGAGATCGTTCTGGACAGGAACTGTGTGGTAGAGtCCATTCCAGATAAGGAAGGTAAGCGCTGCctgttttgtgtgaaaacaacCAACAGGACGTATGAAATAAGTGCGTCAGATCAGAAGCAGCGTCTGGATTGGATGCAAGCCATCCAGACAGCGGTCCGTCTGTTGTCGGAGGGAAAGATGTCTCTGCATCAGGAGCTGAAGCTACGCCGACGGGAGCAGAGGGAGCAGAGCCCCCGGGCCAGAGAGGAGCTACAGGCCCTGCAGGACCTTcaggaagagaaggaaaagcAGGAGCAGGAGATGGAGCAGCTACTGAAGATACAGCAGGAGTGCGAGGAGCACCGGCGgcgggaggaggagagggggagagaacaGCAACAAGAGGTACAGAGGACCTTGGAGAGACAACTAGAGGAAGCAGAGAGGGTCCGGGAGAGCATGGCAGCGGAGATCGTTCTGAAGGAGCAGGAGGCCGAGAGGCAGCGGAGGAGGATCCAGGAGCTGGAGTTGACCCAGCAGCGGCTAGAGATCGCCCTGGACACAGAGATCCACGCCAgactggaggaggagagagccAGGATGGAGCAGGAGAGgctgctgcaggaggaagaggaaaagcTAAAACAGTTGAAACAGCTGAAGGAGGAGCAGGAGGTGATGCTAATGAAGGCCCAGCTGGAGAAGAACAAGATGAAAGAGGAAGTGGCTGACAAAGTTCAGGCCTTTGAGATGGCATCACGGGAGCTCAGGAATCTTCAAGAAACAAGACAGAAGAGCAACCTGGACCTGAAGgAAGCCAAAAAGAGATTACGAAGGGCCAGTCGCCATGTAAAGCACTGGAATGTGCAGCTTAATCGTCTAATGCAGCCCATTTCACCCGGAGACCACCTTGCCTCAACACAGTGCAACAAGCACCTGAGGGAAGAAGCCTTAGCCAGCAAAGAGTTTGATTCCAGACAGCATCCCATCAGGAGGCCAGCTTCACGTGATTCAGGGAGCAGCTCCTCTGAAGAAGAAGACCTTCAGGAGCCGCTGGAGACACTCAGCCTAGCAAGCTCCAAAACGGCAAAGTCAGAAACCAATGGGCAAGGCCTTTAAAAGACGCAGATGGGTGCATTCTTGTGTCCTGAAGCATGGAACTGTTTATTAGACCCAAGGAGTAAACACCCCTCATATACCAAGTGTGCATTAGGTTGGTTTTGACCCAGGGAAGCTCCTACAGAGAGAACCAACAGGTATGTCAGGATGGTTGGGTTTCAGTGGCACCAGATGTTACTTTTCCTACAGATGTATGCCTCGTCTGTGAAGAAGTCTACACCCAAGTGCTTAGAGGTAGCTGCAGCCAACAGCAGGCCACACCATCTGAGCACCAGCCATGGCTCCTTATCAGTACACCTGTCAGAACTGCACACCTGTGTCAATTGAAAGTACTGTAATTACGTTTACCTTTCATGCTGGTTGAGCAATGTGTACTGGGGTCAAAACgatatggaaaaataatttaaaatactatatatttagtATGTATATGTCAATAGATGTTAATATACAAGTCAAAGACAGTGGCTTTTAGAAGGTGGAAAAGATTTTCCAAGACATCAGTAGAGCTACAGCTCCAAAGAACTGTAGGTGGTGTCTAGTAAACAAAGTCATGATGCTTGATTATTAAATagcttattaaatattattaaatagttgtacatacttttttcccttccataaaactgtttaaaatgaactgTTCCAAAAACGTCAACAGGCTGAAAAGGAACAATTTTAGCAGAGTGGctaatgtttgcttttctctaGAATTGTATCACTTGGTGGACGATATTAAGAATAAGGTAAAACATTAAGGCCAAGAATAAGGCCAAAACATCATCTGTATGATTTttttcaaagagaaaaataaactaaatttataaacaatataaataaagtttgtaCCATGAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012784 True 2781 mRNA 0.47 12 7961047 7975857

Neighbor

gene id symbol gene type direction distance location
AMCG00012779 NA coding downstream 406 7955746 ~ 7960641 (-)
AMCG00012780 ttll1 coding downstream 9418 7938482 ~ 7951629 (-)
AMCG00012781 NA coding downstream 32997 7908135 ~ 7928050 (-)
AMCG00012783 NA coding downstream 69928 7884831 ~ 7891119 (-)
AMCG00012776 NA coding downstream 119867 7840369 ~ 7841180 (-)
AMCG00012792 NA coding upstream 101963 8077820 ~ 8087653 (-)
AMCG00012791 ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 coding upstream 113368 8089225 ~ 8093252 (-)
AMCG00012789 kxd1 coding upstream 117569 8093426 ~ 8113586 (-)
AMCG00012788 tmtc1,LOC102198433 coding upstream 156574 8132431 ~ 8159884 (-)
AMCG00012790 LOC106609308,LOC106576167 coding upstream 205657 8181514 ~ 8188363 (-)
G39707 NA non-coding downstream 132900 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 289405 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 810224 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1062810 6897987 ~ 6898237 (-)
G39556 NA non-coding downstream 1165314 6786456 ~ 6795733 (-)
G39839 NA non-coding upstream 293137 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 592195 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 684591 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 924256 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 1107803 9083660 ~ 9085793 (-)
AMCG00012782 NA other downstream 56592 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1265123 6638480 ~ 6695924 (-)
G39487 NA other downstream 1504869 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 1897230 6052364 ~ 6063817 (-)
G38490 NA other downstream 5776884 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 1136584 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2764497 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2882024 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4264539 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4920663 12896520 ~ 12906333 (-)

Expression


Co-expression Network