AMCG00012787 (tmtc1,LOC107580673,LOC107656308,LOC107725887)


Basic Information

Item Value
gene id AMCG00012787
gene name tmtc1,LOC107580673,LOC107656308,LOC107725887
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8245202 ~ 8251415 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012787
ATGACGGTTCACGCACAAGAGAAGGTCTCGGCTCCTTTCTGTCTCCCTGTCCTGTCGGCTCCGGGCAGGGGTGTCCTCTGCTATGTCCTCCTGTGTCTCGCCTGCGCTCTGTGCTACAGCAACTCTCTGCCCGGGGAGTTTGTGCACGACGACGTGTGGGCTATCAGCAACAACCCCGACGTGAGACCCGGCTCCGGCCTGAGGAGTATCTTCTTCAACGACTTCTGGGGCAAGAGGATGGCCGACAACACCAGCCACAAGTCCTACAGACCTCTGTGCATCCTCACCTTCAAGTTGAACATAATACTAGGTGGGATGAAGCCCTTCCACTTCCATGTGGTGAACGTGTTCTTGCACTGTGCTGtgacagccctgttgatgtACACTTGTGAGAGGACCGTGTTTGATGACAGTCGCCTGGCGTTCCTCACGGCTCTTCTGTTTGCCGTCCATCCCATCCATACAGAAGCAGTAAGTTTTCAATGGTGTCCATAG

Function

symbol description
tmtc1 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human TMTC1 (transmembrane O-mannosyltransferase targeting cadherins 1).

NR:

description
PREDICTED: transmembrane and TPR repeat-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012787 True 495 mRNA 0.55 2 8245202 8251415

Neighbor

gene id symbol gene type direction distance location
AMCG00012790 LOC106609308,LOC106576167 coding downstream 56839 8181514 ~ 8188363 (-)
AMCG00012788 tmtc1,LOC102198433 coding downstream 85318 8132431 ~ 8159884 (-)
AMCG00012789 kxd1 coding downstream 131616 8093426 ~ 8113586 (-)
AMCG00012791 ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 coding downstream 151950 8089225 ~ 8093252 (-)
AMCG00012792 NA coding downstream 157549 8077820 ~ 8087653 (-)
AMCG00012794 ipo8,LOC106576166 coding upstream 22539 8273954 ~ 8298974 (-)
AMCG00012793 NA coding upstream 50713 8302128 ~ 8306274 (-)
AMCG00012795 NA coding upstream 62358 8313773 ~ 8325929 (-)
AMCG00012796 fam60a,LOC106584673,LOC107103542,LOC106926356,LOC103133713 coding upstream 80521 8331936 ~ 8337762 (-)
AMCG00012801 dennd5b coding upstream 90444 8341859 ~ 8374472 (-)
G39707 NA non-coding downstream 417055 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 573560 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 1094379 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1346965 6897987 ~ 6898237 (-)
G39556 NA non-coding downstream 1449469 6786456 ~ 6795733 (-)
G39839 NA non-coding upstream 17579 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 316637 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 409033 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 648698 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 832245 9083660 ~ 9085793 (-)
AMCG00012782 NA other downstream 340747 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1549278 6638480 ~ 6695924 (-)
G39487 NA other downstream 1789024 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2181385 6052364 ~ 6063817 (-)
G38490 NA other downstream 6061039 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 861026 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2488939 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2606466 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3988981 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4645105 12896520 ~ 12906333 (-)

Expression


Co-expression Network