AMCG00012788 (tmtc1,LOC102198433)


Basic Information

Item Value
gene id AMCG00012788
gene name tmtc1,LOC102198433
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8132431 ~ 8159884 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012788
GCCAGTCAGCAGGTGCTCTACTGATGTGCGTTTTCCCAGTAGTGCCGTCATTGATTCACGCTTTGTGTctcttctccccccccccccctctcttttccAGCATGGGGTACTGCATCTTGGTTGTTCATGGCTTAAACAAGCTCTGCACCATGGTGGGCAAATGGGGGGCGACTGCACTCACCGTGTCcatgctgctgctcctgctgctctTCTCATGGAAGACGGTACAGCAGAATGAGATCTGGCTCTCCAGAGAGTCCCTGTTCAGATCTGGAATTCAGACTCTGCCTCACAATGCCAAGGTACACTACAACTATGCCAACTTCCTGAAAGACCAAGGACGAAATCAAGAAGCCATTCATCACTATGAAACTGCTCTCCAACTATATCCGAGGCATGCAAGTGCCATGAATAACCTCGGGACTCTGACGAGGGGACCGGAGGAGGCACAGACGTACTACAGAAAGGCTCTGCAGATAAACCCGCAGCACAATCGAGCCCTGTTCAACTTGGGCAACCTCCTCAAGTCCCAGGGGAAAGAGGCTGAGGCTGAACAGCTGCTGAGAGATTCAATCCGGTTCGGCCCCCACTTTGCTGATGCCTACTCCAGCCTTGCGTCCTTGTTTGCTGAGCAGaagCGGTTTGATGAGGCCAATGAAGTTTATCTCCAGGGCATTGAAAACTGCCCTGACAGTTCAGATCTACATAATAATTTTGGTGTTTTCCTAGTGGACGCAGGAGAAGCGGACAGGGCAGCCAGCCATTACCAGCAAGCCATTCGGCTCAAACCAACACACTACGTCGCCATGGTGAACCTGGGAAGATTGCTGCGCTCGTCTGCTCAGAACAAGGAGGCAGAATCCTGGGCCTTGCAGGTGACCCGCAAGGTGGAAATCCTGACTCCGCTGGGGGCTCTGTACTACAACACGGGACGCTTTGAGGAGGCGCTGCAGGTGTACAGAGAGGCCGCTGCCCTACAGCCCGACAACACTGAGATCTGGCTGGCACTGgctCAAGTCTTAGCTATGGCCGGTCGAACAAAAGAAGCAGAAAAGATGACCTTTGGGATTTTATCTAGAAACATTGCCTGTGTTGAATGTTATCGACTCTTATCTGCAATTTACAGCAAGCGGGGCAGTCATAATGAGGCTCTTGACGCACTAGAAAAAGCCATCCAGCTGAACCATGGGGATCCAAACATGAAGGCTGAACTGCACTTCTCGAAAGGCAACCAGCTGAGAGAAATGAACCTCCTCAACCATGCTTTTGAGAGCTACAAGATAGCTGTTGAACTCAATCCTGACCAATCACAGGCCTGGATGAACATGGGTGGAATCCAGCACATAAAGGGAGACTACGTGGCAGCGCGCAAGTACTACGAAAAGGCCTTGCAGCTTTCCCCGGGCAGCAAGCTCCTGAAGGAGAACCTGGCCAAACTAGACCGCTTGGAAAAGAAGCTGCAGGGG

Function

symbol description
tmtc1 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Orthologous to human TMTC1 (transmembrane O-mannosyltransferase targeting cadherins 1).

NR:

description
PREDICTED: transmembrane and TPR repeat-containing protein 1 isoform X3

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012788 True 1466 mRNA 0.52 11 8132431 8159884

Neighbor

gene id symbol gene type direction distance location
AMCG00012789 kxd1 coding downstream 18845 8093426 ~ 8113586 (-)
AMCG00012791 ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 coding downstream 39179 8089225 ~ 8093252 (-)
AMCG00012792 NA coding downstream 44778 8077820 ~ 8087653 (-)
AMCG00012784 NA coding downstream 156574 7961047 ~ 7975857 (-)
AMCG00012779 NA coding downstream 171790 7955746 ~ 7960641 (-)
AMCG00012790 LOC106609308,LOC106576167 coding upstream 21630 8181514 ~ 8188363 (-)
AMCG00012787 tmtc1,LOC107580673,LOC107656308,LOC107725887 coding upstream 85318 8245202 ~ 8251415 (-)
AMCG00012794 ipo8,LOC106576166 coding upstream 114070 8273954 ~ 8298974 (-)
AMCG00012793 NA coding upstream 142244 8302128 ~ 8306274 (-)
AMCG00012795 NA coding upstream 153889 8313773 ~ 8325929 (-)
G39707 NA non-coding downstream 304284 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 460789 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 981608 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1234194 6897987 ~ 6898237 (-)
G39556 NA non-coding downstream 1336698 6786456 ~ 6795733 (-)
G39839 NA non-coding upstream 109110 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 408168 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 500564 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 740229 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 923776 9083660 ~ 9085793 (-)
AMCG00012782 NA other downstream 227976 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1436507 6638480 ~ 6695924 (-)
G39487 NA other downstream 1676253 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2068614 6052364 ~ 6063817 (-)
G38490 NA other downstream 5948268 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 952557 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2580470 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2697997 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4080512 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4736636 12896520 ~ 12906333 (-)

Expression


Co-expression Network