AMCG00012789 (kxd1)


Basic Information

Item Value
gene id AMCG00012789
gene name kxd1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8093426 ~ 8113586 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012789
ATCGTGAGTAACATTATTTGTGAAGTCGTGATTTGCTCCTACATTTTAAAGTCCGTTAAAtagttaattatatttgtcgttttttatataaataattgtgctTTCTTTTCAGGTGCACGGTTGAGCAGTCTTGGTTACTGTGGAAATTTTCAGTAATGGATACGACCTTTCTTTTAGTgggaatttgtttttctgtcgcATTTACACTCgAGTTGTGTGGCAAAGGAAAATACAGCCCTGAGATTAATCACGACTCCACGTCCCCTACCGAGGCGGTTGCGCACTCCTACCCCTGGCAGGTGATCCTTCACCACGTCAACGCGCAGCGCTGTGGCGGCGCTGTCATCGCGGCGCAGTGGCTTGTGACGGCTGCCAGTTGTGTCAACCAATATATAAGCCACCCAGAGGAGTGGACCATTACTCTGGGAGCTCATGAAAGAAGTGACATGAAGCAGAGAGTAACTGCTATAGAGGTGCACCCAAACTACAGCTTATTCTACGGCGACTATGACTTGGCTCTCGTCAGGGTGAACCAGTTGGAATTCAGTGACACAGTTAGTCCTGTCTGCTTGCTCTCCACCATCCAAGAGACCTCCAATGCCTTTGTGACAACTGGCTGGAATATCGTAGATGGTCAGAGAGAGGCCAAGCTACAGCAGCAGCTTGTGCTCATCCAGAACTCCAAGGTCTGCAGTGGATTCAATGCAAACTGGATCCCAGAGAAGATGGACATCATTCTCCCCATCTCTGGGAGCAGTGGTTGTTTGGATCATGAGCTACCGGCTCCTCAAGGGTCCTTGAGGTCCCCACAGTACTCCCAAAACCTGGACTGCTCCTGGATCCTACAGCTGGATGTGAACCAGACTGTTGAGATAAGTGTAATGAAGATGCACACCCCAAACTTGGATTGCAAGAATACCTTTTTCAGCATTGAACAAAAAGTGGGCAATGAAACCTTTCTAGGTGGCCCACGAGCCTGGAGACTACAGGAAGTCAACATCACAGTCATTGATTCAGACACCTGTAACTGGCAATTCTACAATGGCAAGGTCACAGATTCCATGATTTGTGCTGGAGAGCCTACTGGGGGTAAAGATGCCTGTCAGAAGGCAGACAGCCATGACCTCAGAGGCGCAGGTGCGATTCAGTCAGCTGTCTGTGGAACCGGCAGCACCGAGCCTTGTGGACTGAACTCTGGATTGGCAAAGGTGATTCTGTCAGACGAGGGACAGACTGTGGTAGAAAATGTGTCCGAAGCATGCGAGAATTCCTGGCCCTGGCTGGTTAGCCTGCAGCATGATGGGGAACATTGCTGCACTGGGACACTCATTGATCCTGGCTGGGTGCTGGCCAGAAGACACTGCAGTTGCAGttcCATTACAGCTGTAGTTCTGGGAACATATGACTTTAAAATGCCAGGACAAAGCATCCCAGTGAGTGACAACATCAGCCCATTAGACAGCACTGGCACCCATCCCCTTAATGACCTGACCCTCATCCGCCTGCAGACTCCTCCCATATTAGTCTGTGATCAAGAAAGCACAATGGAGCCCACTGCCTCTGGCATGTTTTGTGGGAGGATGCTCAGCATGGTGAATTCAGAAGATGTGAATGCCATTATTCAAGCACAGAGACACATGCTGGACCGCTTTGAGAAGACAAATGAAATGCTGTTGAATTTCAACGGTCTTTCCAACGTGCGCCTCCAGCAAATGAACGACCGCTTCCAGCACCACACGAGATCGTTGGTTGAGATGAAGAAAGATTTGGACAGCATTTTTAGACGCATCAGGACACTCAAGGGCAAAGTTGCAAAGCAGTACCCAGATGCTTTCAGTAACATCCACGAGTCTCCGATTCTGGAGGATGACGATGATGAATTTGACCCCATCCCCCAAAGCACAGCCACTACCACGGCCACGTCCGAGCAGAGCACGGAGTCCTGTGACACCAGCCCCGACATCATCTCCCCCAGCGCGAGTCGCTGCTCGGAGGACTTTTCCCAGGAGCAGCCTGCCACGCCCACCTCCAACGGCCAGAGGAAATCCTCcaatgaggaggaggaggaggatccagGGAAGGACTAAATGAGGAATAGTGAACTAAAGATTTCTGCATGGACTTCTGACTACATTtcattgaaaacacacacaaaaaaggtcaTCCTGACTGTTGTGGactttttgcacttttgttatGACTGAAGGATGCAAGCTAACCTCATTCTCACATGGCACTAATTATGGAGGAGTTGATACTTGACAATGGATTTGGGATTTCACTTGCTTTTTAGCAGTACAACTGGGATATATGTATGATTCATAGGCaaatgtgtgtgcttttttttaataaatgaaactattgtttttactttcattttttgaCTATTTAAGGATTAAAAAGTGGAATCCTCTTAGTACCTTAACTGTATTTGTAATGCTCAAATTCTGTTTTTGAATAAAGAAGAACATGAGTGAAGTGtaaaaatttacattttacgtGGTCCATATTCTGCAATCTAAATTttacacaaacatgttttatttattgcatctTCTCATTGGCACTGTGTTCAAAGAAATGTGTGTGGGCCACAAACACTCAAAAAGGACAATGACATTGTTCTAAACATTCACTAGCCAAATATCAGTGTGCTTGTTTTGTACTATAGGAGCAGTGACTGAGAGTTGGTTATTTTGCaaatcagttaaaataaaaaacagaactgaaacTATGAAAAGGAAGAGTTGCCAAAACAACTCAACAAAGTGAGGcatttatatttcagtatttcaaaaGTGTTATTCTGTGATGTATTTAGTGCAATACCTATTTTTCATTAAACCATACTTATCAAGGATattttttcagagtttgttgaaaaCTGGTTCAGCCAAGAAAAAACTGTTACGATTGCAACGACTTGAGACAGGGTGTGACAAAGCTTTAGTTAAAACGTTTAAAAACTCCCCATGGGAGTGGGTTGTCATGTGAGAGAGTGAACTGCGCTTCTGAGTTTGGAGGAAATACTCATGCCAGTTCTGTTACTGCAAATAAACCGCTTTAGAGGACGGAAGCACCTTTAAATCCACAGCCACTGTCACAAGGAGACACCAGTTTCACCATAAAATGGTTACCTTGCTCCCTTTTTGCATAACAGAAAACTGCAGTGCCCACATTGCGTGGCTAAAGCTTTGGGATATCTTAATCAAGAAGGTTCGGAGGTATAATCTCTGTAATTGAACAATGGCAAGACTGATCCTTTATGTGCTGGGACTTATAATTGTTTCATATTTCccttttattgaaaaaaaatgtcacattgtaTTATGGCTCCCATTTTCCTGTCGACTGACGTACAACAGACTATTTTTAATCTGGT

Function

symbol description
kxd1 Predicted to be involved in lysosome localization and vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Orthologous to human KXD1 (KxDL motif containing 1).

NR:

description
PREDICTED: kxDL motif-containing protein 1 isoform X2

GO: NA

KEGG:

id description
K20818 KXD1, BORCS4; KxDL motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012789 True 3382 mRNA 0.44 14 8093426 8113586

Neighbor

gene id symbol gene type direction distance location
AMCG00012791 ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 coding downstream 174 8089225 ~ 8093252 (-)
AMCG00012792 NA coding downstream 5773 8077820 ~ 8087653 (-)
AMCG00012784 NA coding downstream 117569 7961047 ~ 7975857 (-)
AMCG00012779 NA coding downstream 132785 7955746 ~ 7960641 (-)
AMCG00012780 ttll1 coding downstream 141797 7938482 ~ 7951629 (-)
AMCG00012788 tmtc1,LOC102198433 coding upstream 18845 8132431 ~ 8159884 (-)
AMCG00012790 LOC106609308,LOC106576167 coding upstream 67928 8181514 ~ 8188363 (-)
AMCG00012787 tmtc1,LOC107580673,LOC107656308,LOC107725887 coding upstream 131616 8245202 ~ 8251415 (-)
AMCG00012794 ipo8,LOC106576166 coding upstream 160368 8273954 ~ 8298974 (-)
AMCG00012793 NA coding upstream 188542 8302128 ~ 8306274 (-)
G39707 NA non-coding downstream 265279 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 421784 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 942603 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1195189 6897987 ~ 6898237 (-)
G39556 NA non-coding downstream 1297693 6786456 ~ 6795733 (-)
G39839 NA non-coding upstream 155408 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 454466 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 546862 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 786527 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 970074 9083660 ~ 9085793 (-)
AMCG00012782 NA other downstream 188971 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1397502 6638480 ~ 6695924 (-)
G39487 NA other downstream 1637248 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2029609 6052364 ~ 6063817 (-)
G38490 NA other downstream 5909263 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 998855 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2626768 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2744295 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4126810 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4782934 12896520 ~ 12906333 (-)

Expression


Co-expression Network