Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00012790 |
| gene name | LOC106609308,LOC106576167 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 8181514 ~ 8188363 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: transmembrane and TPR repeat-containing protein 1-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00012790 | True | 294 | mRNA | 0.55 | 2 | 8181514 | 8188363 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00012788 | tmtc1,LOC102198433 | coding | downstream | 21630 | 8132431 ~ 8159884 (-) |
| AMCG00012789 | kxd1 | coding | downstream | 67928 | 8093426 ~ 8113586 (-) |
| AMCG00012791 | ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 | coding | downstream | 88262 | 8089225 ~ 8093252 (-) |
| AMCG00012792 | NA | coding | downstream | 93861 | 8077820 ~ 8087653 (-) |
| AMCG00012784 | NA | coding | downstream | 205657 | 7961047 ~ 7975857 (-) |
| AMCG00012787 | tmtc1,LOC107580673,LOC107656308,LOC107725887 | coding | upstream | 56839 | 8245202 ~ 8251415 (-) |
| AMCG00012794 | ipo8,LOC106576166 | coding | upstream | 85591 | 8273954 ~ 8298974 (-) |
| AMCG00012793 | NA | coding | upstream | 113765 | 8302128 ~ 8306274 (-) |
| AMCG00012795 | NA | coding | upstream | 125410 | 8313773 ~ 8325929 (-) |
| AMCG00012796 | fam60a,LOC106584673,LOC107103542,LOC106926356,LOC103133713 | coding | upstream | 143573 | 8331936 ~ 8337762 (-) |
| G39707 | NA | non-coding | downstream | 353367 | 7827278 ~ 7828147 (-) |
| G39662 | NA | non-coding | downstream | 509872 | 7671236 ~ 7671642 (-) |
| G39580 | NA | non-coding | downstream | 1030691 | 7150617 ~ 7150823 (-) |
| G39561 | NA | non-coding | downstream | 1283277 | 6897987 ~ 6898237 (-) |
| G39556 | NA | non-coding | downstream | 1385781 | 6786456 ~ 6795733 (-) |
| G39839 | NA | non-coding | upstream | 80631 | 8268994 ~ 8269221 (-) |
| G39929 | NA | non-coding | upstream | 379689 | 8568052 ~ 8569889 (-) |
| G39952 | NA | non-coding | upstream | 472085 | 8660448 ~ 8667024 (-) |
| G40008 | NA | non-coding | upstream | 711750 | 8900113 ~ 8901481 (-) |
| G40039 | NA | non-coding | upstream | 895297 | 9083660 ~ 9085793 (-) |
| AMCG00012782 | NA | other | downstream | 277059 | 7891489 ~ 7904455 (-) |
| AMCG00012751 | NA | other | downstream | 1485590 | 6638480 ~ 6695924 (-) |
| G39487 | NA | other | downstream | 1725336 | 6455721 ~ 6456178 (-) |
| AMCG00012732 | NA | other | downstream | 2117697 | 6052364 ~ 6063817 (-) |
| G38490 | NA | other | downstream | 5997351 | 2183885 ~ 2184163 (-) |
| AMCG00012829 | NA | other | upstream | 924078 | 9112441 ~ 9152405 (-) |
| AMCG00012858 | NA | other | upstream | 2551991 | 10740354 ~ 10753698 (-) |
| AMCG00012856 | lsm8,LOC107592220,LOC107580766,LOC107656302 | other | upstream | 2669518 | 10857881 ~ 10862322 (-) |
| AMCG00012888 | mkln1,LOC107104017 | other | upstream | 4052033 | 12240396 ~ 12271789 (-) |
| AMCG00012906 | kin | other | upstream | 4708157 | 12896520 ~ 12906333 (-) |
