AMCG00012792


Basic Information

Item Value
gene id AMCG00012792
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8077820 ~ 8087653 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012792
ATGGCAGCATACAACTTCTCCCATCGGATAGACCATCTGTCTTTTGGGGAGGAGATACCAGGCATCATCAATCCCTTGGATGGAACAGAAAAAATCTGCTCTGATCATAATCAGATGTTCCAGTATTTCATCACAATAGTGCCAACAAAGCTCAAAACCTACAAAATCGCAGCAGATACCCATCAGTACTCAGTCACAGAACggTTCCTTGTGCGGTTATGTGGAATCATTGGAGGAATATTCTCCACAACAGGCATGCTCCATGGATTTGTGGGTTTCTTAGTGGACGTTGTCTGCTGTCGATTTAAGCTGGGAGTTTACAAGCCCAAGGAAGTGTCTCTGAGTCACACAGGTCAGGACTCTGCAGGCCATTGGACAAACTGTCGCATCTCGAAAGAGCGGCTAATGGCCGAGAAGACCAGGAGAATGGGACTCGAACACAACTACAACAGGTTAGTGAACATCGCTTCTGACTTCCTGGGCATGTAA

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012792 True 489 mRNA 0.47 6 8077820 8087653

Neighbor

gene id symbol gene type direction distance location
AMCG00012784 NA coding downstream 101963 7961047 ~ 7975857 (-)
AMCG00012779 NA coding downstream 117179 7955746 ~ 7960641 (-)
AMCG00012780 ttll1 coding downstream 126191 7938482 ~ 7951629 (-)
AMCG00012781 NA coding downstream 149770 7908135 ~ 7928050 (-)
AMCG00012783 NA coding downstream 186701 7884831 ~ 7891119 (-)
AMCG00012791 ergic2,LOC107574188,LOC107678288,LOC107554946,LOC108419686,LOC107716711,LOC107661471 coding upstream 1572 8089225 ~ 8093252 (-)
AMCG00012789 kxd1 coding upstream 5773 8093426 ~ 8113586 (-)
AMCG00012788 tmtc1,LOC102198433 coding upstream 44778 8132431 ~ 8159884 (-)
AMCG00012790 LOC106609308,LOC106576167 coding upstream 93861 8181514 ~ 8188363 (-)
AMCG00012787 tmtc1,LOC107580673,LOC107656308,LOC107725887 coding upstream 157549 8245202 ~ 8251415 (-)
G39707 NA non-coding downstream 249673 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 406178 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 926997 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1179583 6897987 ~ 6898237 (-)
G39556 NA non-coding downstream 1282087 6786456 ~ 6795733 (-)
G39839 NA non-coding upstream 181341 8268994 ~ 8269221 (-)
G39929 NA non-coding upstream 480399 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 572795 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 812460 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 996007 9083660 ~ 9085793 (-)
AMCG00012782 NA other downstream 173365 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1381896 6638480 ~ 6695924 (-)
G39487 NA other downstream 1621642 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2014003 6052364 ~ 6063817 (-)
G38490 NA other downstream 5893657 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 1024788 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2652701 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2770228 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 4152743 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4808867 12896520 ~ 12906333 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_06720233_06726592 ERGIC2 coding CI01000055 null 6719870 ~ 6727509 (+)