AMCG00012795


Basic Information

Item Value
gene id AMCG00012795
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8313773 ~ 8325929 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012795
ATGGCGTTCCAGTCCGGCGAGGGTATAAAAAGAAACCAATTGACAATGGTACAGCTTTCCCCTTCCCCCGTCCTCGATCTCTCTCCAACGTCTGACCACTCCGAGGAGGTGAAAGTGAAGCATGGGAGTCCCAAGCTGGAGGGCACTCCTGTCCTCAGCTCACTGCAGCTGGCCCTGGCTTCATCCACAACCACCTACCAAGGCTATGAAACCTACATTGAGGATGGGCTCATCTGTTTAAAGCACAAGATCCGCAACATTGAAAAGAAGAAGCTGAAACTAGAAGACTATAAGCAGCGTCTCAAGGATGGAAATACACTTAATGAAGACCAGCTGGAAGCTGTGGAGAAGTATGATGAGGTTGTGCATAACCTGGCTTTTGCAAGAGAGCTCCAAAAGACCTTCAGTTCCCTCAGCCAAGATCTGCTGAAGGCCCAGAGGAAAGCAGTGCGGCGAGAGCAGGTGATGAAGATGGAGGCAGATAGGAAGCGACTGCGTATGGTTCTTCAGCTCCATTACATCTTTCAGAGCCTACAGCAGGAGCATGTGAGGAAGGACTTCCGCAGTGGCCTCAATGGGGCGCCCTTCCATTCTACCCGCGAGCTCCAGTACCTCCTGAACTTCTCTAAGCTGGTGGGGTGTAACAGAGATGAGAGCATGAGCTTGGAAGATCAAATGGAGCAGGCATCCGCTACTTACTGGGAGTTGCTAGAAGGAACAGACAAACCTGTGGCTGGTACTACCTACAAGCACATGAAGGAGCAACTTGCCAAACTGCTGGACTGTGGCTACTTTGACCACATTCCTGTCCCTCACAGTGAAGGTCTAGAAGAAGCTGTGGCAGAAGTAGTAAAGGCAGAACCGCCAAAAGATCGTTCCAGGATTCCAGATCTACCTGGAATGCCAAAATCAGCATGTGAAGTCCCAACAAGAGAGTTTCTTAACAGACGCTACTTGCCTGAAACAGACTTCAGCGCCAAAGAGAAGTTGGCCAAGCAACCTCTGTCACAGGCCTGGAAGAAGGAATTCCTGGCCCTGAAGCAGCAGGAGCCACCTGACTCCTGGGACATGGATTATGTGGAAAAGCCAACACCTCCCCAGCAGGCTGTGTTGAAACCCTGCAGATCAGCAGCAGTATTTGTGCCCAAAGAGCCAGAGGAGGTGAAGAGGCCTGCCACAGAGCCAAAACAAAGGCGTGAACGGAAGTCCAAGACTGAGCAAGAAACTAAACctGTACCAAAGTCTGACCCTCCCCCAGTAGCAGTGTTCAATTCCCCATCGTCCCTCCCAAAAGATCCAGTGCTGCGTAAACAGAAGCTGGAGGATCTGATGGATCAGATTCAGGGGTCATTTAGCTTTATGCAGGATTCGGTTCTTGAAGGAGAGGGTTCGCCCACCAGTGGAACTCCCAGAAAACCGCATTCTGCACTTGTAACATCTACACCAATAGTGCAGAGAGAAGTAAAGAAAAGCCAAGCGGACCTCCTCCCGAAAGCCTTGCAGCCTTCTTCATCCCCTGTTGCCCGTGTTCCCATTTGCCCCAAAACCACCTTGACCAATGGAGAGCACTCTTTGAATGACTTGGCAATGGACCTCTCTGCGGATGAATCTGCCCATGTGCCCATCTCTCTGCCAAACAAAAGTGTCCCCACCATCAGCATATCTACCTCCCCTCCCCGTCCAGGGCAGACATTCTCTTTGCCTCCCACTAACTGCACCTTAAGCATGACAGCAGCACCATTTCAGACCATGCACACTGTTTTCAAGGTCAATGCCCCCTTGCCACCTAGAAGTGATTCAGATTCGAAAGCGGATTCAAGTGGATTTTCCGATACTTACAACCTAAGCTATTCCACAGCCAGTACTCAGACTCCCCCTGAGAGCTCCCTTCAGCCCTCAGGATTGCTCGATCAGGATGATCTACAGCCAGCTACTTCATATCAGTCTGAATGCCCAGTAAGCAATGGCTGTCAGACTTACTTGTCTCCTGGACCTCAAGTTGGTGGCTTCTCTCGCTCCACCCAGCCCTACTACACTCGAGGGGCAGTCAGAGGAGGGTTTGACTGTTACAAAAATGGCATCCAGTCCCCTGGTGGAAGCTTCATTCCTCAGACCTATCCTACTAGAGAGTGTACGACTATTCTGTATGGGACCAGGGAAACTGGGTACCAGCAGAATTATAAACGAGGAGGAGGACCTGGTGGCCAACGCATTAATTCAAGAGCTACCTGGAGCGATTCTTCCCAAGTGAGCAGTCCAGAGCGGGATAATGAGACTTTTGCGAGTGTGGACTCTGGCCAGACTGGCTCTCGCTGCATTACTCCAATCGATGTCCCAGTGACCACCCAGGGGCCTACCCTCATGCCCGTGCACGTCTATCCCCTCCCCCAGCAGATGCGAGTCGCCTTCTCTGCTGCCCGCACTGCCAACTTCGCTCCTGGAACCCTGGACCAACCCATTGTTTTTGACCTCCTCCTCAACAACCTTGGAGAGACCTTTGACATGCAGATGGGAAGGTTCTCCTGTCCGGTCAATGGCACCTATGTCTTCATCTTTCACATACTCAAGCTGGCAGTCAACGTGCCCTTGTACGTCAACCTGATGAGGAATGAGGAAGTGATGGTGTCTGCCTACGCAAATGATGGAGCGCCGGACCACGAGACGGCGAGCAACCATGCCGTGCTGCAGCTGTACCATGGAGACCAGATCTGGCTGCGACTGCACAGAGGTGCCATCTATGGAAGTAGCTGGAAATATTCCACGTTCTCGGGCTACCTTCTGTACCAGGATTGAAATCCTCTCTGACTCAATCACCatagggataaaaaaaaaaacacagggcgggggggggggggg

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0031346 positive regulation of cell projection organization biological_process
GO:2000055 positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0051094 positive regulation of developmental process biological_process

KEGG:

id description
K18744 CAPRIN2, EEG1; caprin-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012795 True 2856 mRNA 0.52 20 8313773 8325929

Neighbor

gene id symbol gene type direction distance location
AMCG00012793 NA coding downstream 7499 8302128 ~ 8306274 (-)
AMCG00012794 ipo8,LOC106576166 coding downstream 14799 8273954 ~ 8298974 (-)
AMCG00012787 tmtc1,LOC107580673,LOC107656308,LOC107725887 coding downstream 62358 8245202 ~ 8251415 (-)
AMCG00012790 LOC106609308,LOC106576167 coding downstream 125410 8181514 ~ 8188363 (-)
AMCG00012788 tmtc1,LOC102198433 coding downstream 153889 8132431 ~ 8159884 (-)
AMCG00012796 fam60a,LOC106584673,LOC107103542,LOC106926356,LOC103133713 coding upstream 6007 8331936 ~ 8337762 (-)
AMCG00012801 dennd5b coding upstream 15930 8341859 ~ 8374472 (-)
AMCG00012799 dennd5b coding upstream 58848 8384777 ~ 8392408 (-)
AMCG00012802 NA coding upstream 87115 8413044 ~ 8438978 (-)
AMCG00012800 NA coding upstream 118067 8443996 ~ 8452153 (-)
G39839 NA non-coding downstream 44552 8268994 ~ 8269221 (-)
G39707 NA non-coding downstream 485626 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 642131 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 1162950 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1415536 6897987 ~ 6898237 (-)
G39929 NA non-coding upstream 242123 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 334519 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 574184 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 757731 9083660 ~ 9085793 (-)
G40115 NA non-coding upstream 910971 9236900 ~ 9257451 (-)
AMCG00012782 NA other downstream 409318 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1617849 6638480 ~ 6695924 (-)
G39487 NA other downstream 1857595 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2249956 6052364 ~ 6063817 (-)
G38490 NA other downstream 6129610 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 786512 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2414425 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2531952 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3914467 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4570591 12896520 ~ 12906333 (-)

Expression


Co-expression Network