AMCG00012800


Basic Information

Item Value
gene id AMCG00012800
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8443996 ~ 8452153 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012800
ATTTAGTTTGGATGAAGAATTGAAGTAAACAACAACGACAGTGCGCTGTTAATTGTCTCTCATCTTCCACCGACGTGTTTAGTTACACTTTCGTCTCTCCATTTCAGCCCAAATCCTCAATTATTTTCCAAACGTTGTGCTTTGTTATAAAACACCCCTTAGTATCGGCATAGTACTCCACAGACCACACCAAACACAGCGATAAGATGTCCTGCTCAACGCTGTTAGATTTGTGCTTATGCTGTTTGGCAGAATATGCAGTGAAATACCACATTGATATTAAGACACTGCCACCCACGTTAAAGGACAGGCTGATACACATCATGAGCAGACATGGCACTGTTACTGACACGAACATTAGCCAGGTTTTACATCCTGGAATCCAGATATTAGACTTGCAGAACTGTAAAATATCCGACAGCACTCTCAAACAGCTCAGCAGTTGCCGGCAATTGAAGAAAATTTGCCTGAACTCCATGGAAGAAAACTGTTATAATATTTCTTCAGAAGGTATTAAAGCCATCGCCCTCACATGCCCCTACTTGAGTGAGATCATGTTGTGGAGGTGCTGCAGTGTGACAGATGAGGGGATTCGTGCTCTGGCGCACAACTGTAAACTGCTGCAAATTGTCACGCTCAGTGGCTGCTCTGCTATCACTGATGCTGCCCTGCTGGCACTGGGGCAGAACTGCAGGCTCTTACGAGGCATCAGTTTCTCTGCCACACAGGTAACAGATGAGGGTGTTGTTGGACTAGCAACTGGAGTTTGCTCTCAGAGTTTAAAGGAGATACATATGGACCGCTGTCAGTTCCTGACGGATGAAGCTGTGGAGGCTCTCTTGACTCGCTGCCCTCAGATTAAAATCTTGCTCTTCCATGGCTGTCCACTGATAACAGATCGTTCCAGAGAAGCACTCCAGCACCTTGTGGGGCCAGACAAAATTCACCAGGTGACCTGGAGTGTGTACTGATTACACAGCCATTGTCACTGAGgaagattatttatttcacaaatagACTAAGCTATGACATTCCACACTGTAGTACTGCATTATGTTGATTAAAGTGAACTAGAAAATGTATAGCATGTTAATTTTCACTTGGTAATAGTATTAAGCACTCTACCTGGATAAGATCTCGGCAGACTACGTGTTCATGGGGTGATTTGTGTTCTAGGTTCTGAAATGCttgcaaacttaaaaaataaacaaccccccctcccccactaaagatagatagataattgAAAGGACAAAAAGCAAACGGTTACAATCATTTGAATGATCAACCAGGTATAGCCAAGTGATTGTAAGAATTGCTAAGCCACTGTTAATTTGCCATGGTCATGCGGTACAAGGCAAGGTTTGTGCTAGGGGTCACAgacatgcatgtttattttccactttcaaagtgtattgttttatgtgaGCAAATACAACCCATAGGATGTGTGGAATATCAGGCTTATTCATCCTGTGAACAGAGGCAAGCAGCAGCTACACACATGAACCACTCACAAGTGAACATGTGCACCCACTTGTATAATGCTTATAGTCTAGAAAGagagattatttgtattaactcCTGTAATAACAGTATGACACCCAGTTGTTATTTCTTGTAGTTACAGGAAACAACTGTGACACCTAATGACCGTACaggtatataaaaatatattttgttcctgATCCATTTAAAGGTCTAATTGCTTgttctctgaaattaaagctttTCATTACTGTTATATTTGAACAGACATGTCCATTTCATGCTTAAAGTTCATTTCAAATTCTTGGGAATAAAACTAATAAAGTACAGGATAACACTGTATATACTGATATCTATGGTATCATGTATCTTCAATATAAAatcttctctctcctccaagTACTGACACAACTCCGGTGAACCATTACTGTATCTGGACTAATGTCACAGATTACTTGTTTCTGCACAGATTTTATAGCATGATACACACACTGGAAAATACCATATACCATAGATAGGCAGCATTGTGTAGTAGTGTTTAGGGCTGGGTGGGGCAGttctgttgtacccttgagcaaaatacttcacttagattgctccagtaaaatacccagctgtataaatgggtacaaatgtaagtcggctgaataagagcgtctgctaaatgacaaataatgtaatgtacattatcgactatttctttttaatattaatatttctgttttgctaaGGATCTAGAATAAACCTGAAGCATGAAATGGACGTGAATGTTCAAACATAATGGTATGGAATAGCACTTTTATATCCGAGCAATTAGACCTGTAAAGAATTTAAATGTAGTATATGCTAAATCGGTTTATAACATGTCTCACTGTACTGTGGAGTAGTCTTGTCAAATTAACAAACATTACAGTTTTATAGGGTTTACATTTTCCGTTTAGTTCATATGTTGTAAATGCCCTACCCTGTAaattgttgatgtttttctaTGCTTCTGTAatcttacatttaaattcacGGTTTTCTAtgcatattaattttaaaaattgtgAAGGATAAAGAGAATAAAGCAGAATGTTATTTCCGTTAAA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012800 True 2579 mRNA 0.39 7 8443996 8452153

Neighbor

gene id symbol gene type direction distance location
AMCG00012802 NA coding downstream 5018 8413044 ~ 8438978 (-)
AMCG00012799 dennd5b coding downstream 51588 8384777 ~ 8392408 (-)
AMCG00012801 dennd5b coding downstream 69524 8341859 ~ 8374472 (-)
AMCG00012796 fam60a,LOC106584673,LOC107103542,LOC106926356,LOC103133713 coding downstream 106234 8331936 ~ 8337762 (-)
AMCG00012795 NA coding downstream 118067 8313773 ~ 8325929 (-)
AMCG00012804 NA coding upstream 12007 8464160 ~ 8479179 (-)
AMCG00012806 NA coding upstream 47484 8499637 ~ 8532718 (-)
AMCG00012805 NA coding upstream 84015 8536168 ~ 8553089 (-)
AMCG00012809 NA coding upstream 160089 8612242 ~ 8616101 (-)
AMCG00012808 mpped1,LOC106959763,LOC103131679,LOC108250209,LOC107103222 coding upstream 185784 8637937 ~ 8650040 (-)
G39839 NA non-coding downstream 174775 8268994 ~ 8269221 (-)
G39707 NA non-coding downstream 615849 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 772354 7671236 ~ 7671642 (-)
G39580 NA non-coding downstream 1293173 7150617 ~ 7150823 (-)
G39561 NA non-coding downstream 1545759 6897987 ~ 6898237 (-)
G39929 NA non-coding upstream 115899 8568052 ~ 8569889 (-)
G39952 NA non-coding upstream 208295 8660448 ~ 8667024 (-)
G40008 NA non-coding upstream 447960 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 631507 9083660 ~ 9085793 (-)
G40115 NA non-coding upstream 784747 9236900 ~ 9257451 (-)
AMCG00012782 NA other downstream 539541 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1748072 6638480 ~ 6695924 (-)
G39487 NA other downstream 1987818 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2380179 6052364 ~ 6063817 (-)
G38490 NA other downstream 6259833 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 660288 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2288201 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2405728 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3788243 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4444367 12896520 ~ 12906333 (-)

Expression


Co-expression Network