AMCG00012803 (sult4a1,LOC102784496,LOC106576158)


Basic Information

Item Value
gene id AMCG00012803
gene name sult4a1,LOC102784496,LOC106576158
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8536233 ~ 8569891 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012803
CAAGGCGGCAGCATCCCGCCGCATCATCCGGAGCATCAATGAGCTAAAGCCTATTACGTCACTTTGTCCGGATCTGATTTGCTGAAGGTCATCGCTCTCAACCGAGCACGTCTTCTcattcatttgattttttttttcttctgatctTTCCCCAATTAACATATCGCTACCACCGGGGTATCTGTGGTTGTTGTACGAGGCGTCAGGATGGCAGAGAGCGAGGCAGAAACGCCAAGCACCCCGATAGAGTTTGAGAGCAAATACTTCGAGTACAATGGAGTGAGGCTTCCTCCCTTCTGCCGGGGGAAGATGGAGGAGATTGCTAACTTCTCTCTCAGGAGTAGTGACATATGGATTGTCACCTACCCCAAATCAGGGACCAGTCTGCTACAGGAGGTTGTGTACCTGGTGAGCCAGGGGGCCGACCCAGACGAGATTGGGCTGATGAACATCGACGAACAGCTCCCTGTGTTGGAGTACCCACAGCCAGGGCTTGATATCATCCAGGAGCTGACATCTCCCCGTCTGATTAAAAGCCATCTTCCATATCTGTTCCTGCCTACAGCCATGCACAATGGAGAGTCCAAGGTGATCTACATGGCCAGGAATCCCAAAGACCTGGTGGTGTCCTACTATCAGTTCCATCGCTCCCTCCGCACCATGAGCTACAGAGGGACATTTCAGGAGTTCTGTCGCCGGTTTATGAATGACAAGTTGGGTTATGGATCCTGGTTTGAGCATGTGCAGGAATTCTGGGAGCACCGTATGGACTCCAATGTGCTCTTCTTGAAATATGAAGACATGTACAAGGACCTTGCGACCCTGGTGGAGCAGCTGGCCAGGTTCCTGGGGGTGTCTTGTGACAAGGCCCAGCTGGAAGCCATGGTGGAGAGCTGTAACCAGCTGATTGAGCAATGCTGCAACTCGGAGTCCCTCTCAATCTGCAGGGgGAGAGTTGGCTTGTGGAAGGACATCTTTACTGTATCGATGAATGAGAAGTTTGATGCAGTTTACAAACAGAAGATGGGCAAGTCAGACCTCAGCTTTGATTTTAGCTTGTAAAGACGTCCTGCTGCATGCCACACTGGAAACCACAGACTTTTGCTGTCGCTTCCCAATGTCTTCTATCAACTCGCTGGATCAACTGGCTATTCCATGTAATTCAACAGCACCTAGATTTTCCGATAGAGACTTGTGGATCTCCAGTTGCTGTCTGATCTTAATGTATAATCAATCATTCATTCTTTCtgttctattctattctattcaaTTCTAATCACGTGATGGTATAATGGCAGAAACAGAAAGCTTTGTATAAACTAATGGCACTACCATGAATACAAATTCTCTGGAGGTACAATTTCTAGTCGTGTAGTGGTCTccacatgtattaaaaaaaaactatatttaacaGAACCAAACCATAATAAACAGTCAGCTTAGTCAAAGAATGTGCTGGAAGAATCTCAGGGTTCATCTGTTGTAGTGAAAAAGTGTAATGCTGAAAATATCCCCATCACTGAGACCTGTTTCTCACTACCTTTTTGGAACTGTTTGAGTGGGAAGGTTGACTTAggaaagccaaaaaaaaaaaaaaacatgatttcattTGGAAAAGCAAATGGGCTTTGCATGTTAGAAGTGAATGAgggtgtttgtttctctttaaagTGTTTGTGGTCAGTTTTATATTGACCACATTgctgtcatatatatatatatatatatatatatatgtatatgcagaGCAGCTGATTTCTTCGATTTTTTGTTcgttctgtgtttttgtttattttattcatgaaatgCAGCTATTAAAGGGAACATATCACAATCCTTTGCCCGTtgtgttttccagttttaaCTATATCTCAGCCTTAACGCAGAATCGTTAAGGCAAACCCACTGACACTCAATGTTTTACACATCTTGTCATCTTTCCTCTGTAggactttaaataataatgaaacatctcccttaaaatgtaattgaaccacataaaagaaaaaaagtaaatgtccaGGGAGGCAGTTGTGACAAAGTCCTGTAGAGGAACAGATGGGATGAGCCACATGTTGAACAGACCTTAGTTATAACTTTGGAAATGAGAAACTGAGAGAGGAACCTCATCTTTGGATGTATCAATACAATGGAGAGCAGGGCCATTCCCACATCAAAGCCTACTGCTATTCATTTGTATTGCTCCTGCATTGACTACCAAACAGCTTGTAAGTCCCCACCCGCCACCATTACTGCACAGTTAGACACTTTTGAATGTCTTTATTGTGTGGATGTACAAAGCTTTGGATCGATATCATGTACGGGACGTTTCAAATGGCATGACTAGAGTATAATAGCACTTTCTCAGTTATACAGTCTCTTTTACTGGCACACAGcttatgttatatttttatattgtttggtTGTTGTATAAATTCCTATGCACTGTACTTTCCATGCTTGCTTTGCTGATTTATTAATAAAGATGTGTCTTCAGTCTA
>TU49788
ATCTGTACactatttgtcttttcttttaaactaggTATTCACCAATCTAGAtactatgttttttgtttctacaTATATTACTTAATAGTTTCTTTACATACCACATCATTTTGGATGgtttgggaaaaaaacagatatcCCGGATGAAAGTCTGATCCAGAGCTGCATTTACATATTAGTGCAGTGAATTGCAATCATTGTGATAATAACAATCCTAGTAACCTCTGATTGAAAAAGTGTGCAATTATAGTGTTCTTCTGGAGAAATTAATCTCAGAAGGCTACTTTACATGTAAAACTTGGAAGGctgctgtgtttaaaacaaacaaaaacactcattacatattttaacaatataaacattCTGTTCCTTCATCTCATTCAGCTGCAGGTCATGTATCTAACCATGCCacgaatacatacataatttagtTATGAACAAATATAGTAGACTGTGTAAAGTGCAGGCGTTTGGGCCACACTGATGTACTGAAAGTACTGAAATGACTTAAAGACCCTAGAAAAAAAGTCCTGGATTAAATCAGAACTCTGAAAAAGGAACTGACATCCAagacatgaaatatatatatatatatatatatatatatatatatatatatatatatatgtatatgcagaGCAGCTGATTTCTTCGATTTTTTGTTcgttctgtgtttttgtttattttattcatgaaatgCAGCTATTAAAGGGAACATATCACAATCCTTTGCCCGTtgtgttttccagttttaaCTATATCTCAGCCTTAACGCAGAATCGTTAAGGCAAACCCACTGACACTCAATGTTTTACACATCTTGTCATCTTTCCTCTGTAggactttaaataataatgaaacatctcccttaaaatgtaattgaaccacataaaagaaaaaaagtaaatgtccaGGGAGGCAGTTGTGACAAAGTCCTGTAGAGGAACAGATGGGATGAGCCACATGTTGAACAGACCTTAGTTATAACTTTGGAAATGAGAAACTGAGAGAGGAACCTCATCTTTGGATGTATCAATACAATGGAGAGCAGGGCCATTCCCACATCAAAGCCTACTGCTATTCATTTGTATTGCTCCTGCATTGACTACCAAACAGCTTGTAAGTCCCCACCCGCCACCATTACTGCACAGTTAGACACTTTTGAATGTCTTTATTGTGTGGATGTACAAAGCTTTGGATCGATATCATGTACGGGACGTTTCAAATGGCATGACTAGAGTATAATAGCACTTTCTCAGTTATACAGTCTCTTTTACTGGCACACAGcttatgttatatttttatattgtttggtTGTTGTATAAATTCCTATGCACTGTACTTTCCATGCTTGCTTTGCTGATTTATTAATAAAGATGTGTCTTCAGTCTA

Function

symbol description
sult4a1 Predicted to enable sulfotransferase activity. Predicted to be involved in sulfation. Predicted to be active in cytoplasm. Is expressed in brain. Orthologous to human SULT4A1 (sulfotransferase family 4A member 1).

NR:

description
PREDICTED: sulfotransferase 4A1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K11823 SULT4A1; sulfotransferase 4A1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012803 True 2501 mRNA 0.43 7 8555090 8569891
TU49788 False 1392 lncRNA 0.34 2 8536233 8569891

Neighbor

gene id symbol gene type direction distance location
AMCG00012798 NA coding upstream 92591 8442404 ~ 8443642 (+)
AMCG00012785 LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266 coding upstream 459086 8041802 ~ 8077147 (+)
AMCG00012786 NA coding upstream 501834 8034094 ~ 8034399 (+)
AMCG00012778 NA coding upstream 577258 7936380 ~ 7958975 (+)
AMCG00012777 NA coding upstream 671403 7862259 ~ 7864830 (+)
AMCG00012807 NA coding downstream 1567 8571458 ~ 8607377 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding downstream 225277 8795168 ~ 8799438 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding downstream 253606 8823497 ~ 8844351 (+)
AMCG00012815 NA coding downstream 284190 8854081 ~ 8872158 (+)
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding downstream 469431 9039322 ~ 9043541 (+)
G39838 NA non-coding upstream 267012 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 403669 8057019 ~ 8132564 (+)
G39737 NA non-coding upstream 627067 7906257 ~ 7909166 (+)
G39669 NA non-coding upstream 800965 7714497 ~ 7735268 (+)
G39668 NA non-coding upstream 822990 7708867 ~ 7713243 (+)
G39951 NA non-coding downstream 96863 8666754 ~ 8667464 (+)
G40022 NA non-coding downstream 481196 9051087 ~ 9053819 (+)
G40041 NA non-coding downstream 521423 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 694987 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 724440 9294331 ~ 9294642 (+)
AMCG00012797 NA other upstream 190378 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 700019 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 808405 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 1154674 7344450 ~ 7381559 (+)
AMCG00012748 itpr2,LOC100196824 other upstream 2018250 6476249 ~ 6517983 (+)
AMCG00012818 NA other downstream 513771 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 542569 9112460 ~ 9130211 (+)
G40224 NA other downstream 1867016 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1970837 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3883348 12453239 ~ 12500402 (+)

Expression


Co-expression Network